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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273850 (59 seq.)
>W1710943777
LOPZ01000064
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
273
197
-
Ile
GAT
[ENA]
¡û
>W1710943779
LOPZ01000071
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
275
199
-
Ile
GAT
[ENA]
¡û
>W1710943786
LOPZ01000086
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
5
81
+
Ile
GAT
[ENA]
¡û
>W1710943788
LOPZ01000088
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
80
4
-
Ile
GAT
[ENA]
¡û
>W1710943796
LOPZ01000120
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
142
218
+
Ile
GAT
[ENA]
¡û
>W1711029642
LRFI01000070
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
273
197
-
Ile
GAT
[ENA]
¡û
>W1711029644
LRFI01000076
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
275
199
-
Ile
GAT
[ENA]
¡û
>W1711029658
LRFI01000092
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
5
81
+
Ile
GAT
[ENA]
¡û
>W1711029660
LRFI01000094
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
80
4
-
Ile
GAT
[ENA]
¡û
>W1711029661
LRFI01000126
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
142
218
+
Ile
GAT
[ENA]
¡û
>W131239269
BANL01000054
Gammaproteobacteria
Idiomarina sp. 28-8 [BANL]
55
131
+
Ile
GAT
[ENA]
¡û
>W131239272
BANL01000057
Gammaproteobacteria
Idiomarina sp. 28-8 [BANL]
85
161
+
Ile
GAT
[ENA]
¡û
>W131239276
BANL01000102
Gammaproteobacteria
Idiomarina sp. 28-8 [BANL]
80
4
-
Ile
GAT
[ENA]
¡û
>C011026
AE017340
Gammaproteobacteria
Idiomarina loihiensis L2TR [AE017340]
2752552
2752476
-
Ile
GAT
[Ensembl]
¡û
>C011030
AE017340
Gammaproteobacteria
Idiomarina loihiensis L2TR [AE017340]
2436211
2436135
-
Ile
GAT
[Ensembl]
¡û
>C011034
AE017340
Gammaproteobacteria
Idiomarina loihiensis L2TR [AE017340]
2027399
2027323
-
Ile
GAT
[Ensembl]
¡û
>C011047
AE017340
Gammaproteobacteria
Idiomarina loihiensis L2TR [AE017340]
1266544
1266468
-
Ile
GAT
[Ensembl]
¡û
>WENV170112305
CEGE01001481
[CEGE] microbial mat metagenome; grass silage
356
280
-
Ile
GAT
[ENA]
¢þ
>WENV170691923
LFUG01003551
[LFUG] hypersaline lake metagenome; virus filtrate of water collected from the Namib Desert Eisfeld playa
333
409
+
Ile
GAT
[ENA]
¢þ
>WENV170735586
LULL01004745
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
1798
1722
-
Ile
GAT
[ENA]
¢þ
>WENV170740305
LULR01004940
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
1258
1334
+
Ile
GAT
[ENA]
¢þ
>WENV170744590
LULX01003946
[LULX] marine metagenome; Red Sea water column Station 91 - depth 500m
1644
1568
-
Ile
GAT
[ENA]
¢þ
>C181059156
CP022133
Gammaproteobacteria
Idiomarina piscisalsi 10PY1A [CP022133]
61081
61157
+
Ile
GAT
-
¡û
>C181059160
CP022133
Gammaproteobacteria
Idiomarina piscisalsi 10PY1A [CP022133]
369402
369478
+
Ile
GAT
-
¡û
>C181059164
CP022133
Gammaproteobacteria
Idiomarina piscisalsi 10PY1A [CP022133]
758602
758678
+
Ile
GAT
-
¡û
>C181059192
CP022133
Gammaproteobacteria
Idiomarina piscisalsi 10PY1A [CP022133]
1936196
1936120
-
Ile
GAT
-
¡û
>C181110233
CP025000
Gammaproteobacteria
Idiomarina sp. X4 [CP025000]
1203133
1203209
+
Ile
GAT
-
¡û
>C181110237
CP025000
Gammaproteobacteria
Idiomarina sp. X4 [CP025000]
1536667
1536743
+
Ile
GAT
-
¡û
>C181110241
CP025000
Gammaproteobacteria
Idiomarina sp. X4 [CP025000]
1901442
1901518
+
Ile
GAT
-
¡û
>C181110270
CP025000
Gammaproteobacteria
Idiomarina sp. X4 [CP025000]
433777
433701
-
Ile
GAT
-
¡û
>W1911585715
PIQC01000012
Gammaproteobacteria
Idiomarina ramblicola R22 [PIQC]
1773
1849
+
Ile
GAT
[ENA]
¡û
>W1911585865
PIQF01000006
Gammaproteobacteria
Idiomarina seosinensis CL-SP19 [PIQF]
3400
3324
-
Ile
GAT
[ENA]
¡û
>W1911717876
QQTD01000001
Gammaproteobacteria
Idiomarina sp. HD9-110m-PIT-SAG04 [QQTD]
34281
34357
+
Ile
GAT
[ENA]
¡û
>W1911717885
QQTE01000007
Gammaproteobacteria
Idiomarina sp. HD9-110m-PIT-SAG05 [QQTE]
1949
2025
+
Ile
GAT
[ENA]
¡û
>W1810609580
QGUA01000002
Gammaproteobacteria
Idiomarina loihiensis H2.2 [QGUA]
3568
3492
-
Ile
GAT
[ENA]
¡û
>C131016274
CP005964
Gammaproteobacteria
Idiomarina loihiensis GSL 199 [CP005964]
2752667
2752591
-
Ile
GAT
[Ensembl]
¡û
>C131016278
CP005964
Gammaproteobacteria
Idiomarina loihiensis GSL 199 [CP005964]
2436326
2436250
-
Ile
GAT
[Ensembl]
¡û
>C131016282
CP005964
Gammaproteobacteria
Idiomarina loihiensis GSL 199 [CP005964]
2027514
2027438
-
Ile
GAT
[Ensembl]
¡û
>C131016295
CP005964
Gammaproteobacteria
Idiomarina loihiensis GSL 199 [CP005964]
1266659
1266583
-
Ile
GAT
[Ensembl]
¡û
>W1610616506
LGOW01000020
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
1774
1850
+
Ile
GAT
[ENA]
¡û
>W1610621761
LHSG01000035
Gammaproteobacteria
Idiomarina zobellii [LHSG]
282
206
-
Ile
GAT
[ENA]
¡û
>W1610621762
LHSG01000053
Gammaproteobacteria
Idiomarina zobellii [LHSG]
82
6
-
Ile
GAT
[ENA]
¡û
>W1610621763
LHSG01000080
Gammaproteobacteria
Idiomarina zobellii [LHSG]
46
122
+
Ile
GAT
[ENA]
¡û
>W1610800077
LOPZ01000064
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
273
197
-
Ile
GAT
[ENA]
¡û
>W1610800079
LOPZ01000071
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
275
199
-
Ile
GAT
[ENA]
¡û
>W1610800086
LOPZ01000086
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
5
81
+
Ile
GAT
[ENA]
¡û
>W1610800088
LOPZ01000088
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
80
4
-
Ile
GAT
[ENA]
¡û
>W1610800096
LOPZ01000120
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
142
218
+
Ile
GAT
[ENA]
¡û
>W1610877910
LRFI01000070
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
273
197
-
Ile
GAT
[ENA]
¡û
>W1610877912
LRFI01000076
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
275
199
-
Ile
GAT
[ENA]
¡û
>W1610877926
LRFI01000092
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
5
81
+
Ile
GAT
[ENA]
¡û
>W1610877928
LRFI01000094
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
80
4
-
Ile
GAT
[ENA]
¡û
>W1610877929
LRFI01000126
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
142
218
+
Ile
GAT
[ENA]
¡û
>ENV002896
AY934357
Environmental sample from ENV division of INSDC
74
152
+
Ile
GAT
[ENA]
>W1710577963
FPBE01000012
Gammaproteobacteria
Idiomarina abyssalis [FPBE]
1774
1850
+
Ile
GAT
[ENA]
¡û
>W1710741641
LGOW01000020
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
1774
1850
+
Ile
GAT
[ENA]
¡û
>W1710752634
LHSG01000035
Gammaproteobacteria
Idiomarina zobellii [LHSG]
282
206
-
Ile
GAT
[ENA]
¡û
>W1710752635
LHSG01000053
Gammaproteobacteria
Idiomarina zobellii [LHSG]
82
6
-
Ile
GAT
[ENA]
¡û
>W1710752636
LHSG01000080
Gammaproteobacteria
Idiomarina zobellii [LHSG]
46
122
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK