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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273908 (43 seq.)
>W1711055212
LRUK01000028
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
27969
28045
+
Arg
CCG
[ENA]
¡û
>W1711089868
LTAB01000001
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
631607
631683
+
Arg
CCG
[ENA]
¡û
>W1711227759
LXVX01000002
Alphaproteobacteria
Sphingobium sp. TCM1 [LXVX]
206640
206716
+
Arg
CCG
[ENA]
¡û
>W1711250008
LYMJ01000001
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
457658
457734
+
Arg
CCG
[ENA]
¡û
>C171019724
CP013070
Alphaproteobacteria
Sphingobium indicum B90A [CP013070]
1088140
1088064
-
Arg
CCG
-
¡û
>W131196373
ASTG01000020
Alphaproteobacteria
Sphingobium bisphenolivorans YL23 [ASTG]
27302
27226
-
Arg
CCG
[ENA]
¡û
>W131224722
AUDA01000104
Alphaproteobacteria
Sphingobium indicum IP26 [AUDA]
52407
52483
+
Arg
CCG
[ENA]
¡û
>W141076280
ATDO01000077
Alphaproteobacteria
Sphingobium sp. HDIP04 [ATDO]
34779
34703
-
Arg
CCG
[ENA]
¡û
>W141078114
ATHO01000144
Alphaproteobacteria
Sphingobium quisquiliarum P25 [ATHO]
20674
20750
+
Arg
CCG
[ENA]
¡û
>WENV181155331
OEID01102622
[OEID] soil metagenome; soil
140
64
-
Arg
CCG
[ENA]
¢þ
>WENV181163591
OEIQ01109467
[OEIQ] soil metagenome; soil
152
228
+
Arg
CCG
[ENA]
¢þ
>WENV181840227
OGVO01056341
[OGVO] freshwater metagenome; freshwater
287
363
+
Arg
CCG
[ENA]
¢þ
>W141231025
BATN01000035
Alphaproteobacteria
Sphingobium fuliginis KK22 [BATN]
34152
34076
-
Arg
CCG
[ENA]
¡û
>W141285076
JANF02000046
Alphaproteobacteria
Sphingobium indicum F2 [JANF]
45153
45229
+
Arg
CCG
[ENA]
¡û
>W141285094
JANF02000058
Alphaproteobacteria
Sphingobium indicum F2 [JANF]
37414
37338
-
Arg
CCG
[ENA]
¡û
>WENV170004537
AGTN01711820
[AGTN] bioreactor metagenome; poplar biomass
251
327
+
Arg
CCG
[ENA]
¢þ
>W141400561
JDRU02000872
Alphaproteobacteria
Sphingomonas sp. BHC-A [JDRU]
411
335
-
Arg
CCG
[ENA]
¡û
>WENV170278350
CERQ01082485
[CERQ] marine metagenome genome assembly TARA_065_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
607
683
+
Arg
CCG
[ENA]
¢þ
>W141462277
JFHR01000001
Alphaproteobacteria
Sphingobium chlorophenolicum [JFHR]
62740
62664
-
Arg
CCG
[ENA]
¡û
>W141484894
JFYY01000011
Alphaproteobacteria
Sphingomonas paucimobilis [JFYY]
136634
136558
-
Arg
CCG
[ENA]
¡û
>C191003769
AP018664
Alphaproteobacteria
Sphingobium amiense DSM 16289 [AP018664]
962855
962931
+
Arg
CCG
-
¡û
>C191185533
CP041016
Alphaproteobacteria
Sphingobium fuliginis ATCC 27551 [CP041016, CP041017]
1890903
1890979
+
Arg
CCG
-
¡û
>W1910649298
LXYF01000041
Alphaproteobacteria
Sphingobium sp. SA916 [LXYF]
169285
169361
+
Arg
CCG
[ENA]
¡û
>W1810000472
BEWI01000031
Alphaproteobacteria
Sphingobium fuliginis OMI [BEWI]
559368
559292
-
Arg
CCG
[ENA]
¡û
>C151074557
CP010954
Alphaproteobacteria
Sphingobium sp. YBL2 [CP010954]
4304538
4304614
+
Arg
CCG
[Ensembl]
¡û
>W10126750
AEDK01000001
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
649890
649966
+
Arg
CCG
[ENA]
¡û
>C11119773
CP002798
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [CP002798, CP002799]
1111017
1111093
+
Arg
CCG
[Ensembl]
¡û
>W11134011
AEDK01000001
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
649890
649966
+
Arg
CCG
[ENA]
¡û
>W1511592094
LBIC01000003
Alphaproteobacteria
Sphingobium chungbukense DJ77 [LBIC]
403095
403171
+
Arg
CCG
[ENA]
¡û
>W1511646449
LECE01000007
Alphaproteobacteria
Sphingomonas sp. MEA3-1 [LECE]
34199
34123
-
Arg
CCG
[ENA]
¡û
>W121071145
AJXQ01000092
Alphaproteobacteria
Sphingobium indicum B90A [AJXQ]
62828
62752
-
Arg
CCG
[ENA]
¡û
>W1610072028
BCUN01000023
Alphaproteobacteria
Sphingobium amiense NBRC 102518 [BCUN]
58547
58471
-
Arg
CCG
[ENA]
¡û
>W1610076476
BCYT01000017
Alphaproteobacteria
Sphingobium abikonense NBRC 16140 [BCYT]
26773
26697
-
Arg
CCG
[ENA]
¡û
>W1610076890
BCZC01000014
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
23087
23163
+
Arg
CCG
[ENA]
¡û
>W1610609139
LFVX01000001
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
13787
13711
-
Arg
CCG
[ENA]
¡û
>W1610896258
LRUK01000028
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
27969
28045
+
Arg
CCG
[ENA]
¡û
>W1610924212
LTAB01000001
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
631607
631683
+
Arg
CCG
[ENA]
¡û
>W1611011723
LXVX01000002
Alphaproteobacteria
Sphingobium sp. TCM1 [LXVX]
206640
206716
+
Arg
CCG
[ENA]
¡û
>W1611016890
LYMJ01000001
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
457658
457734
+
Arg
CCG
[ENA]
¡û
>W1710069230
BCUN01000023
Alphaproteobacteria
Sphingobium amiense NBRC 102518 [BCUN]
58547
58471
-
Arg
CCG
[ENA]
¡û
>W1710074165
BCYT01000017
Alphaproteobacteria
Sphingobium abikonense NBRC 16140 [BCYT]
26773
26697
-
Arg
CCG
[ENA]
¡û
>W1710074579
BCZC01000014
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
23087
23163
+
Arg
CCG
[ENA]
¡û
>W1710730426
LFVX01000001
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
13787
13711
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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