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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273909 (37 seq.)
>W1711055227
LRUK01000055
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
20192
20116
-
Arg
TCT
[ENA]
¡û
>W1711089909
LTAB01000043
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
20126
20050
-
Arg
TCT
[ENA]
¡û
>W1711250050
LYMJ01000046
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
20206
20130
-
Arg
TCT
[ENA]
¡û
>W1712084201
NHRH01000018
Alphaproteobacteria
Sphingomonas sp. CDS-1 [NHRH]
3836
3912
+
Arg
TCT
[ENA]
¡û
>C171019728
CP013070
Alphaproteobacteria
Sphingobium indicum B90A [CP013070]
550178
550102
-
Arg
TCT
-
¡û
>W131196337
ASTG01000001
Alphaproteobacteria
Sphingobium bisphenolivorans YL23 [ASTG]
258441
258517
+
Arg
TCT
[ENA]
¡û
>WENV180039478
LLBY010077497
[LLBY] soil metagenome; soil from tomato rhizosphere
70
146
+
Arg
TCT
[ENA]
¢þ
>WENV180041437
LLBZ010133746
[LLBZ] soil metagenome; soil from tomato rhizosphere
2466
2542
+
Arg
TCT
[ENA]
¢þ
>W141078093
ATHO01000055
Alphaproteobacteria
Sphingobium quisquiliarum P25 [ATHO]
61324
61248
-
Arg
TCT
[ENA]
¡û
>WENV181167544
OEIU01041437
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1020
944
-
Arg
TCT
[ENA]
¢þ
>W141231037
BATN01000083
Alphaproteobacteria
Sphingobium fuliginis KK22 [BATN]
3823
3899
+
Arg
TCT
[ENA]
¡û
>W141400542
JDRU02000408
Alphaproteobacteria
Sphingomonas sp. BHC-A [JDRU]
1364
1288
-
Arg
TCT
[ENA]
¡û
>W141462316
JFHR01000044
Alphaproteobacteria
Sphingobium chlorophenolicum [JFHR]
27862
27938
+
Arg
TCT
[ENA]
¡û
>C181003251
AP017655
Alphaproteobacteria
Sphingobium cloacae JCM 10874 [AP017655]
3161982
3161906
-
Arg
TCT
-
¡û
>C191185571
CP041016
Alphaproteobacteria
Sphingobium fuliginis ATCC 27551 [CP041016, CP041017]
280650
280574
-
Arg
TCT
-
¡û
>W1910649293
LXYF01000038
Alphaproteobacteria
Sphingobium sp. SA916 [LXYF]
46543
46467
-
Arg
TCT
[ENA]
¡û
>W1910889698
NETV01000001
Alphaproteobacteria
Sphingobium sp. LB126 [NETV]
1024574
1024650
+
Arg
TCT
[ENA]
¡û
>W1911495400
OBMU01000001
Alphaproteobacteria
Novosphingobium sp. Chol11 [OBMU]
1787167
1787243
+
Arg
TCT
[ENA]
¡û
>W1810000479
BEWI01000032
Alphaproteobacteria
Sphingobium fuliginis OMI [BEWI]
1161487
1161563
+
Arg
TCT
[ENA]
¡û
>C151074575
CP010954
Alphaproteobacteria
Sphingobium sp. YBL2 [CP010954]
3194559
3194483
-
Arg
TCT
[Ensembl]
¡û
>W10126772
AEDK01000003
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
180816
180892
+
Arg
TCT
[ENA]
¡û
>C10111668
AP010803
Alphaproteobacteria
Sphingobium indicum UT26S [AP010803, AP010804]
2476281
2476357
+
Arg
TCT
[Ensembl]
¡û
>C11119775
CP002798
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [CP002798, CP002799]
1666275
1666351
+
Arg
TCT
[Ensembl]
¡û
>W11134033
AEDK01000003
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
180816
180892
+
Arg
TCT
[ENA]
¡û
>W1511592114
LBIC01000007
Alphaproteobacteria
Sphingobium chungbukense DJ77 [LBIC]
527803
527879
+
Arg
TCT
[ENA]
¡û
>W1511646453
LECE01000014
Alphaproteobacteria
Sphingomonas sp. MEA3-1 [LECE]
71901
71977
+
Arg
TCT
[ENA]
¡û
>C161003355
CP005083
Alphaproteobacteria
Sphingobium sp. TKS [CP005083, CP005084]
3091812
3091888
+
Arg
TCT
[Ensembl]
¡û
>W1610071986
BCUM01000032
Alphaproteobacteria
Sphingobium cloacae NBRC 102517 [BCUM]
20620
20696
+
Arg
TCT
[ENA]
¡û
>W1610076893
BCZC01000020
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
15843
15767
-
Arg
TCT
[ENA]
¡û
>W121071141
AJXQ01000077
Alphaproteobacteria
Sphingobium indicum B90A [AJXQ]
5961
5885
-
Arg
TCT
[ENA]
¡û
>W1610609161
LFVX01000023
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
70715
70639
-
Arg
TCT
[ENA]
¡û
>W1610896273
LRUK01000055
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
20192
20116
-
Arg
TCT
[ENA]
¡û
>W1610924253
LTAB01000043
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
20126
20050
-
Arg
TCT
[ENA]
¡û
>W1611016932
LYMJ01000046
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
20206
20130
-
Arg
TCT
[ENA]
¡û
>W1710069188
BCUM01000032
Alphaproteobacteria
Sphingobium cloacae NBRC 102517 [BCUM]
20620
20696
+
Arg
TCT
[ENA]
¡û
>W1710074582
BCZC01000020
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
15843
15767
-
Arg
TCT
[ENA]
¡û
>W1710730448
LFVX01000023
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
70715
70639
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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