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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273913 (125 seq.)
>W1710834839
LLJH01000007
Actinomycetota
Cutibacterium avidum [LLJH]
163811
163734
-
Phe
GAA
[ENA]
¡û
>W1710834895
LLJI01000004
Actinomycetota
Cutibacterium avidum [LLJI]
157763
157686
-
Phe
GAA
[ENA]
¡û
>W1710834930
LLJJ01000007
Actinomycetota
Cutibacterium avidum [LLJJ]
163811
163734
-
Phe
GAA
[ENA]
¡û
>W1711055719
LRVD01000009
Actinomycetota
Cutibacterium avidum [LRVD]
163841
163764
-
Phe
GAA
[ENA]
¡û
>W131206169
ATFM01000003
Actinomycetota
Propionibacterium sp. HGH0353 [ATFM]
135836
135913
+
Phe
GAA
[ENA]
¡û
>W1711256155
LYSN01000013
Actinomycetota
Cutibacterium avidum [LYSN]
48690
48767
+
Phe
GAA
[ENA]
¡û
>C171044685
CP015970
Actinomycetota
Acidipropionibacterium acidipropionici F3E8 [CP015970]
1681248
1681324
+
Phe
GAA
-
¡û
>C171054418
CP016954
Actinomycetota
Cutibacterium avidum DPC 6544 [CP016954]
2131803
2131726
-
Phe
GAA
-
¡û
>C171092721
CP019400
Actinomycetota
Acidipropionibacterium acidipropionici WSH1105 [CP019400]
1341549
1341625
+
Phe
GAA
-
¡û
>W131219724
ATYU01000008
Actinomycetota
Acidipropionibacterium acidipropionici DSM 4900 [ATYU]
7944
8020
+
Phe
GAA
[ENA]
¡û
>WENV180165476
OAVK01002181
[OAVK] human gut metagenome; faeces
4330
4407
+
Phe
GAA
[ENA]
¢þ
>WENV180190654
OAXA01000090
[OAXA] human gut metagenome; faeces
9384
9461
+
Phe
GAA
[ENA]
¢þ
>WENV180226753
OBBS01000149
[OBBS] human gut metagenome; Infant 2 DOL 17 gut
5393
5470
+
Phe
GAA
[ENA]
¢þ
>WENV180226959
OBBT01000057
[OBBT] human gut metagenome; Infant 2 DOL 16 gut
48216
48139
-
Phe
GAA
[ENA]
¢þ
>WENV180227823
OBBV01000075
[OBBV] human gut metagenome; Infant 2 DOL 24 gut
43259
43336
+
Phe
GAA
[ENA]
¢þ
>WENV180228110
OBBW01000075
[OBBW] human gut metagenome; Infant 2 DOL 28 gut
43259
43336
+
Phe
GAA
[ENA]
¢þ
>WENV180228698
OBCD01013493
[OBCD] human skin metagenome; Infant 2 DOL 22 skin
222
145
-
Phe
GAA
[ENA]
¢þ
>WENV180230005
OBCK01000238
[OBCK] human gut metagenome; human gut
3599
3522
-
Phe
GAA
[ENA]
¢þ
>WENV180241298
OBDG01000017
[OBDG] human gut metagenome; human gut
49048
49125
+
Phe
GAA
[ENA]
¢þ
>WENV180421470
OBVQ01002796
[OBVQ] human gut metagenome; faeces
538
461
-
Phe
GAA
[ENA]
¢þ
>WENV180422240
OBVS01002010
[OBVS] human gut metagenome; faeces
376
299
-
Phe
GAA
[ENA]
¢þ
>WENV180493841
OBZZ01000426
[OBZZ] human gut metagenome; faeces
11461
11538
+
Phe
GAA
[ENA]
¢þ
>WENV180556146
OCJQ01001968
[OCJQ] human gut metagenome; Infant 2 DOL 15 gut
520
597
+
Phe
GAA
[ENA]
¢þ
>WENV180556462
OCJS01000058
[OCJS] human gut metagenome; Infant 2 DOL 18 gut
43259
43336
+
Phe
GAA
[ENA]
¢þ
>WENV180556706
OCJT01000051
[OCJT] human gut metagenome; Infant 2 DOL 19 gut
43034
43111
+
Phe
GAA
[ENA]
¢þ
>WENV180557178
OCJV01000063
[OCJV] human gut metagenome; Infant 2 DOL 20 gut
43259
43336
+
Phe
GAA
[ENA]
¢þ
>WENV180557473
OCJW01000081
[OCJW] human gut metagenome; Infant 2 DOL 21 gut
43259
43336
+
Phe
GAA
[ENA]
¢þ
>WENV180557780
OCJX01000076
[OCJX] human gut metagenome; Infant 2 DOL 22 gut
43259
43336
+
Phe
GAA
[ENA]
¢þ
>WENV180558895
OCKA01000078
[OCKA] human gut metagenome; Infant 2 DOL 25 gut
43259
43336
+
Phe
GAA
[ENA]
¢þ
>WENV180559200
OCKB01011081
[OCKB] human gut metagenome; Infant 2 DOL 23 gut
263
186
-
Phe
GAA
[ENA]
¢þ
>WENV180559388
OCKC01000087
[OCKC] human gut metagenome; Infant 2 DOL 26 gut
43259
43336
+
Phe
GAA
[ENA]
¢þ
>WENV180559732
OCKD01000077
[OCKD] human gut metagenome; Infant 2 DOL 27 gut
43259
43336
+
Phe
GAA
[ENA]
¢þ
>WENV180562031
OCLA01000012
[OCLA] human gut metagenome; human gut
5650
5727
+
Phe
GAA
[ENA]
¢þ
>WENV180564476
OCLE01000012
[OCLE] human gut metagenome; human gut
49048
49125
+
Phe
GAA
[ENA]
¢þ
>WENV180566341
OCLI01000553
[OCLI] human gut metagenome; human gut
1946
1869
-
Phe
GAA
[ENA]
¢þ
>WENV180568697
OCLN01000064
[OCLN] human gut metagenome; human gut
7882
7805
-
Phe
GAA
[ENA]
¢þ
>WENV180568883
OCLO01000285
[OCLO] human gut metagenome; human gut
1417
1494
+
Phe
GAA
[ENA]
¢þ
>WENV180568968
OCLP01000292
[OCLP] human gut metagenome; human gut
1417
1494
+
Phe
GAA
[ENA]
¢þ
>W141056232
AOUA01000110
Actinomycetota
Cutibacterium avidum TM16 [AOUA]
1121
1198
+
Phe
GAA
[ENA]
¡û
>WENV180623719
OCQF01000964
[OCQF] human gut metagenome; Infant 2 DOL 14 gut
1117
1194
+
Phe
GAA
[ENA]
¢þ
>WENV180624956
OCQI01000008
[OCQI] human gut metagenome; human gut
162628
162551
-
Phe
GAA
[ENA]
¢þ
>WENV180625104
OCQJ01000014
[OCQJ] human gut metagenome; human gut
141387
141310
-
Phe
GAA
[ENA]
¢þ
>WENV180639243
OCRJ01000039
[OCRJ] human gut metagenome; human gut
6739
6816
+
Phe
GAA
[ENA]
¢þ
>WENV181326546
OFLM01000014
[OFLM] metagenome; faeces
56840
56917
+
Phe
GAA
[ENA]
¢þ
>WENV181327017
OFLO01000055
[OFLO] metagenome; faeces
76312
76235
-
Phe
GAA
[ENA]
¢þ
>WENV181327360
OFLP01002498
[OFLP] metagenome; faeces
236
313
+
Phe
GAA
[ENA]
¢þ
>WENV181328501
OFLU01000041
[OFLU] metagenome; faeces
52949
52872
-
Phe
GAA
[ENA]
¢þ
>WENV181328797
OFLV01000017
[OFLV] metagenome; faeces
159673
159596
-
Phe
GAA
[ENA]
¢þ
>WENV181329207
OFLW01000047
[OFLW] metagenome; faeces
48915
48992
+
Phe
GAA
[ENA]
¢þ
>W141155753
AXMF01000003
Actinomycetota
Propionibacterium sp. KPL2005 [AXMF]
1237
1314
+
Phe
GAA
[ENA]
¡û
>W141155834
AXMH01000001
Actinomycetota
Propionibacterium sp. KPL2000 [AXMH]
332252
332329
+
Phe
GAA
[ENA]
¡û
>W141155925
AXMJ01000001
Actinomycetota
Propionibacterium sp. KPL1852 [AXMJ]
339829
339906
+
Phe
GAA
[ENA]
¡û
>W141156127
AXMN01000004
Actinomycetota
Propionibacterium sp. KPL1838 [AXMN]
24043
23966
-
Phe
GAA
[ENA]
¡û
>WENV181804495
OGSF01001364
[OGSF] human gut metagenome; fecal sample 3 from infant 5
1445
1522
+
Phe
GAA
[ENA]
¢þ
>WENV181806330
OGSK01001628
[OGSK] human gut metagenome; fecal sample 2 from infant 5
2446
2523
+
Phe
GAA
[ENA]
¢þ
>WENV181806651
OGSL01000448
[OGSL] human gut metagenome; fecal sample 6 from infant 5
7939
8016
+
Phe
GAA
[ENA]
¢þ
>WENV181814305
OGTG01000016
[OGTG] human gut metagenome; fecal sample 1 from infant 4
159441
159364
-
Phe
GAA
[ENA]
¢þ
>WENV181818455
OGTS01002687
[OGTS] human gut metagenome; fecal sample 4 from infant 4
1437
1360
-
Phe
GAA
[ENA]
¢þ
>WENV181821292
OGUE01000345
[OGUE] human gut metagenome; fecal sample 1 from infant 5
10827
10750
-
Phe
GAA
[ENA]
¢þ
>W141206424
AZMD01000056
Actinomycetota
Propionibacterium sp. DORA_15 [AZMD]
368
291
-
Phe
GAA
[ENA]
¡û
>WENV182643088
OJLS01000567
[OJLS] metagenome; surface
6102
6025
-
Phe
GAA
[ENA]
¢þ
>WENV182800223
OJTZ01002092
[OJTZ] human gut metagenome; human gut
1091
1168
+
Phe
GAA
[ENA]
¢þ
>WENV182804281
OJUT01000081
[OJUT] human gut metagenome; human gut
1181
1258
+
Phe
GAA
[ENA]
¢þ
>WENV182804878
OJUX01005548
[OJUX] human gut metagenome; human gut
1082
1159
+
Phe
GAA
[ENA]
¢þ
>WENV182806758
OJVS01000045
[OJVS] human gut metagenome; human gut
48810
48887
+
Phe
GAA
[ENA]
¢þ
>WENV182807454
OJVW01003952
[OJVW] human gut metagenome; human gut
18
95
+
Phe
GAA
[ENA]
¢þ
>WENV182809643
OJWS01000007
[OJWS] human gut metagenome; human gut
48628
48705
+
Phe
GAA
[ENA]
¢þ
>WENV182812536
OJXT01000018
[OJXT] human gut metagenome; human gut
161532
161455
-
Phe
GAA
[ENA]
¢þ
>WENV182813662
OJYF01000215
[OJYF] human gut metagenome; human gut
448
525
+
Phe
GAA
[ENA]
¢þ
>WENV182814173
OJYH01000043
[OJYH] human gut metagenome; human gut
41999
41922
-
Phe
GAA
[ENA]
¢þ
>WENV182814946
OJYO01000068
[OJYO] human gut metagenome; human gut
10176
10099
-
Phe
GAA
[ENA]
¢þ
>WENV182815426
OJYR01000033
[OJYR] human gut metagenome; human gut
47851
47774
-
Phe
GAA
[ENA]
¢þ
>WENV182815933
OJYV01000037
[OJYV] human gut metagenome; human gut
1181
1258
+
Phe
GAA
[ENA]
¢þ
>WENV182817528
OJZM01000052
[OJZM] human gut metagenome; human gut
48344
48267
-
Phe
GAA
[ENA]
¢þ
>WENV182821388
OKAW01000387
[OKAW] human gut metagenome; human gut
442
519
+
Phe
GAA
[ENA]
¢þ
>WENV182821769
OKBA01000600
[OKBA] human gut metagenome; human gut
4624
4547
-
Phe
GAA
[ENA]
¢þ
>WENV182825888
OKCO01000021
[OKCO] human gut metagenome; human gut
48890
48967
+
Phe
GAA
[ENA]
¢þ
>WENV182826494
OKCS01000027
[OKCS] human gut metagenome; human gut
16943
16866
-
Phe
GAA
[ENA]
¢þ
>WENV182826705
OKCU01000041
[OKCU] human gut metagenome; human gut
18039
17962
-
Phe
GAA
[ENA]
¢þ
>WENV182827017
OKCW01002665
[OKCW] human gut metagenome; human gut
81
4
-
Phe
GAA
[ENA]
¢þ
>WENV182827421
OKCZ01000126
[OKCZ] human gut metagenome; human gut
12840
12763
-
Phe
GAA
[ENA]
¢þ
>WENV182830430
OKDZ01000004
[OKDZ] human gut metagenome; human gut
131494
131417
-
Phe
GAA
[ENA]
¢þ
>WENV182831957
OKEJ01000004
[OKEJ] human gut metagenome; human gut
103990
103913
-
Phe
GAA
[ENA]
¢þ
>WENV182835638
OKFO01002072
[OKFO] human gut metagenome; human gut
101
178
+
Phe
GAA
[ENA]
¢þ
>WENV182837333
OKGF01001410
[OKGF] human gut metagenome; human gut
2192
2115
-
Phe
GAA
[ENA]
¢þ
>WENV182841001
OKHP01000518
[OKHP] human gut metagenome; human gut
1410
1487
+
Phe
GAA
[ENA]
¢þ
>WENV182841403
OKHV01000038
[OKHV] human gut metagenome; human gut
6724
6647
-
Phe
GAA
[ENA]
¢þ
>WENV182842526
OKIF01000007
[OKIF] human gut metagenome; human gut
9337
9414
+
Phe
GAA
[ENA]
¢þ
>WENV182849221
OKKO01002526
[OKKO] human gut metagenome; human gut
768
845
+
Phe
GAA
[ENA]
¢þ
>WENV182850795
OKLF01002170
[OKLF] human gut metagenome; human gut
603
680
+
Phe
GAA
[ENA]
¢þ
>WENV182851193
OKLL01000016
[OKLL] human gut metagenome; human gut
132521
132598
+
Phe
GAA
[ENA]
¢þ
>WENV182852325
OKLW01002446
[OKLW] human gut metagenome; human gut
115
192
+
Phe
GAA
[ENA]
¢þ
>WENV182853359
OKMK01000200
[OKMK] human gut metagenome; human gut
18030
17953
-
Phe
GAA
[ENA]
¢þ
>WENV182857426
OKNX01000431
[OKNX] human gut metagenome; human gut
966
1043
+
Phe
GAA
[ENA]
¢þ
>WENV182858128
OKOC01000076
[OKOC] human gut metagenome; human gut
33941
34018
+
Phe
GAA
[ENA]
¢þ
>WENV182860262
OKOR01000809
[OKOR] human gut metagenome; human gut
1430
1507
+
Phe
GAA
[ENA]
¢þ
>WENV182860472
OKOW01000592
[OKOW] human gut metagenome; human gut
1921
1998
+
Phe
GAA
[ENA]
¢þ
>WENV182860565
OKOX01000017
[OKOX] human gut metagenome; human gut
102321
102398
+
Phe
GAA
[ENA]
¢þ
>WENV182861352
OKPE01000277
[OKPE] human gut metagenome; human gut
2200
2277
+
Phe
GAA
[ENA]
¢þ
>WENV182863336
OKPS01000253
[OKPS] human gut metagenome; human gut
115
192
+
Phe
GAA
[ENA]
¢þ
>WENV182864749
OKQE01000932
[OKQE] human gut metagenome; human gut
3827
3904
+
Phe
GAA
[ENA]
¢þ
>WENV182941312
OKVG01001045
[OKVG] human gut metagenome; human gut
2552
2629
+
Phe
GAA
[ENA]
¢þ
>WENV182944034
OKVI01002235
[OKVI] human gut metagenome; human gut
4100
4023
-
Phe
GAA
[ENA]
¢þ
>WENV182960894
OKWK01000040
[OKWK] human gut metagenome; stool
159463
159386
-
Phe
GAA
[ENA]
¢þ
>WENV183087391
OLJH01001087
[OLJH] human gut metagenome; human gut
1565
1488
-
Phe
GAA
[ENA]
¢þ
>WENV183511614
OMJG01001058
[OMJG] food metagenome; Cotija cheese
2749
2825
+
Phe
GAA
[ENA]
¢þ
>C191030111
CP025198
Actinomycetota
Acidipropionibacterium virtanenii JS278 [CP025198]
891282
891206
-
Phe
GAA
-
¡û
>C191073507
CP031057
Actinomycetota
Acidipropionibacterium acidipropionici WGS7 [CP031057]
1195051
1194975
-
Phe
GAA
-
¡û
>C191180487
CP040634
Actinomycetota
Acidipropionibacterium acidipropionici FAM 19036 [CP040634]
586280
586204
-
Phe
GAA
-
¡û
>W1910852654
NBIO01000001
Actinomycetota
Cutibacterium avidum CI878 [NBIO]
376927
377004
+
Phe
GAA
[ENA]
¡û
>W1910852717
NBIP01000005
Actinomycetota
Cutibacterium avidum CI882 [NBIP]
322897
322974
+
Phe
GAA
[ENA]
¡û
>W1910852782
NBIQ01000008
Actinomycetota
Cutibacterium avidum CI828 [NBIQ]
13653
13730
+
Phe
GAA
[ENA]
¡û
>W1910852829
NBIR01000008
Actinomycetota
Cutibacterium avidum CI855 [NBIR]
49412
49489
+
Phe
GAA
[ENA]
¡û
>W1910852882
NBIS01000011
Actinomycetota
Cutibacterium avidum CI853 [NBIS]
163262
163185
-
Phe
GAA
[ENA]
¡û
>W1911137667
NOWI01000006
Actinomycetota
Cutibacterium avidum P16-029 [NOWI]
128476
128553
+
Phe
GAA
[ENA]
¡û
>W11177560
AGBA01000007
Actinomycetota
Cutibacterium avidum ATCC 25577 [AGBA]
1120
1197
+
Phe
GAA
[ENA]
¡û
>C161051601
CP013126
Actinomycetota
Acidipropionibacterium acidipropionici CGMCC 1.2230 [CP013126]
1947875
1947799
-
Phe
GAA
-
¡û
>C161071860
CP014352
Actinomycetota
Acidipropionibacterium acidipropionici ATCC 55737 [CP014352]
1382608
1382684
+
Phe
GAA
[Ensembl]
¡û
>C131015043
CP005287
Actinomycetota
Cutibacterium avidum 44067 [CP005287]
260208
260131
-
Phe
GAA
[Ensembl]
¡û
>C131003864
CP003493
Actinomycetota
Acidipropionibacterium acidipropionici ATCC 4875 [CP003493]
2839741
2839817
+
Phe
GAA
[Ensembl]
¡û
>W1610896765
LRVD01000009
Actinomycetota
Cutibacterium avidum [LRVD]
163841
163764
-
Phe
GAA
[ENA]
¡û
>W1610958189
LVJK01000003
Actinomycetota
Cutibacterium avidum HL083PV1 [LVJK]
26979
27056
+
Phe
GAA
[ENA]
¡û
>W1610958244
LVJL01000006
Actinomycetota
Cutibacterium avidum HL307PV1 [LVJL]
49589
49666
+
Phe
GAA
[ENA]
¡û
>W1611019531
LYSN01000013
Actinomycetota
Cutibacterium avidum [LYSN]
48690
48767
+
Phe
GAA
[ENA]
¡û
>WENV086049
BABE01001300
Gut microbiome of Human (healthy human sample In-E, Infant, Male)
2053
1975
-
Phe
GAA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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