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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274003 (57 seq.)
>W1710871139
LMLB01000001
Alphaproteobacteria
Sphingomonas sp. Leaf33 [LMLB]
640130
640054
-
Pro
CGG
[ENA]
¡û
>W1710872098
LMLS01000004
Alphaproteobacteria
Sphingomonas sp. Leaf231 [LMLS]
138026
138102
+
Pro
CGG
[ENA]
¡û
>W1711069391
LSFP01000001
Alphaproteobacteria
Zymomonas mobilis [LSFP]
43699
43623
-
Pro
CGG
[ENA]
¡û
>W1711072511
LSHQ01000061
Alphaproteobacteria
Sphingomonas sp. CCH5-A5 [LSHQ]
55028
54952
-
Pro
CGG
[ENA]
¡û
>W1711072759
LSHX01000010
Alphaproteobacteria
Sphingomonas sp. CCH21-G11 [LSHX]
37957
37881
-
Pro
CGG
[ENA]
¡û
>W1711073029
LSIE01000029
Alphaproteobacteria
Sphingomonas sp. CCH16-B10 [LSIE]
2733
2657
-
Pro
CGG
[ENA]
¡û
>W1711073972
LSJC01000081
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
36004
36080
+
Pro
CGG
[ENA]
¡û
>W1711074107
LSJF01000293
Alphaproteobacteria
Sphingomonas sp. CCH9-H8 [LSJF]
5489
5413
-
Pro
CGG
[ENA]
¡û
>W1711074394
LSJM01000274
Alphaproteobacteria
Sphingomonas sp. CCH9-E2 [LSJM]
6651
6575
-
Pro
CGG
[ENA]
¡û
>W1711075254
LSKG01000068
Alphaproteobacteria
Sphingomonas sp. CCH15-F11 [LSKG]
4801
4877
+
Pro
CGG
[ENA]
¡û
>W1711075332
LSKI01000015
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
2727
2651
-
Pro
CGG
[ENA]
¡û
>W1711075590
LSKO01000209
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
40726
40650
-
Pro
CGG
[ENA]
¡û
>W1711075645
LSKP01000008
Alphaproteobacteria
Sphingomonas sp. CCH13-B11 [LSKP]
26620
26696
+
Pro
CGG
[ENA]
¡û
>C171115133
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
955659
955735
+
Pro
CGG
-
¡û
>W131046794
AMSR01000003
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
34725
34649
-
Pro
CGG
[ENA]
¡û
>W131098637
AORY01000012
Alphaproteobacteria
Sphingomonas sp. Mn802worker [AORY]
288454
288530
+
Pro
CGG
[ENA]
¡û
>W131219271
ATYK01000002
Alphaproteobacteria
Sphingomonas phyllosphaerae FA2 [ATYK]
504210
504134
-
Pro
CGG
[ENA]
¡û
>C027961
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
317556
317480
-
Pro
CGG
[Ensembl]
¡û
>WENV180020469
FTCZ01004413
[FTCZ] metagenome; soil
41363
41287
-
Pro
CGG
[ENA]
¢þ
>WENV183728093
PJTP01032582
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
430
354
-
Pro
CGG
[ENA]
¢þ
>WENV170565010
CZQE01000409
[CZQE] hydrothermal vent metagenome; ocean water
6558
6482
-
Pro
CGG
[ENA]
¢þ
>WENV170578255
FUFK010014287
[FUFK] metagenome; unknown
1238
1162
-
Pro
CGG
[ENA]
¢þ
>C181088897
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
319951
319875
-
Pro
CGG
-
¡û
>C181088948
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
319951
319875
-
Pro
CGG
-
¡û
>C181089275
CP023715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP023715]
319951
319875
-
Pro
CGG
-
¡û
>C191145622
CP035711
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP035711]
317550
317474
-
Pro
CGG
-
¡û
>C191145673
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
317550
317474
-
Pro
CGG
-
¡û
>C191145724
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
317550
317474
-
Pro
CGG
-
¡û
>W09133948
ACQU01000001
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [ACQU]
52369
52293
-
Pro
CGG
[ENA]
¡û
>W1910182401
BJMW01000003
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
149749
149825
+
Pro
CGG
[ENA]
¡û
>C141008794
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
1052918
1052994
+
Pro
CGG
[Ensembl]
¡û
>W1911752786
QWLV01000010
Alphaproteobacteria
Sphingomonas gilva ZDH117 [QWLV]
1052
976
-
Pro
CGG
[ENA]
¡û
>W1810779167
QQNB01000001
Alphaproteobacteria
Sphingomonas aracearum WZY 27 [QQNB]
974101
974177
+
Pro
CGG
[ENA]
¡û
>C151004593
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
1052690
1052766
+
Pro
CGG
[Ensembl]
¡û
>C151004644
CP003715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP003715]
1052693
1052769
+
Pro
CGG
[Ensembl]
¡û
>C10114577
CP001722
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NCIMB 11163 [CP001722]
1051235
1051311
+
Pro
CGG
[Ensembl]
¡û
>C121003161
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
1021216
1021140
-
Pro
CGG
[Ensembl]
¡û
>C121015251
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
1051375
1051451
+
Pro
CGG
[Ensembl]
¡û
>W1610076670
BCYX01000028
Alphaproteobacteria
Sphingomonas mali NBRC 15500 [BCYX]
52101
52025
-
Pro
CGG
[ENA]
¡û
>W1610076762
BCYZ01000063
Alphaproteobacteria
Sphingomonas pruni NBRC 15498 [BCYZ]
6110
6186
+
Pro
CGG
[ENA]
¡û
>W1610733485
LMLB01000001
Alphaproteobacteria
Sphingomonas sp. Leaf33 [LMLB]
640130
640054
-
Pro
CGG
[ENA]
¡û
>W1610734444
LMLS01000004
Alphaproteobacteria
Sphingomonas sp. Leaf231 [LMLS]
138026
138102
+
Pro
CGG
[ENA]
¡û
>W1610909919
LSFP01000001
Alphaproteobacteria
Zymomonas mobilis [LSFP]
43699
43623
-
Pro
CGG
[ENA]
¡û
>W1610911771
LSHQ01000061
Alphaproteobacteria
Sphingomonas sp. CCH5-A5 [LSHQ]
55028
54952
-
Pro
CGG
[ENA]
¡û
>W1610912019
LSHX01000010
Alphaproteobacteria
Sphingomonas sp. CCH21-G11 [LSHX]
37957
37881
-
Pro
CGG
[ENA]
¡û
>W1610912334
LSIE01000029
Alphaproteobacteria
Sphingomonas sp. CCH16-B10 [LSIE]
2733
2657
-
Pro
CGG
[ENA]
¡û
>W1610913277
LSJC01000081
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
36004
36080
+
Pro
CGG
[ENA]
¡û
>W1610913412
LSJF01000293
Alphaproteobacteria
Sphingomonas sp. CCH9-H8 [LSJF]
5489
5413
-
Pro
CGG
[ENA]
¡û
>W1610913699
LSJM01000274
Alphaproteobacteria
Sphingomonas sp. CCH9-E2 [LSJM]
6651
6575
-
Pro
CGG
[ENA]
¡û
>W1610914559
LSKG01000068
Alphaproteobacteria
Sphingomonas sp. CCH15-F11 [LSKG]
4801
4877
+
Pro
CGG
[ENA]
¡û
>W1610914637
LSKI01000015
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
2727
2651
-
Pro
CGG
[ENA]
¡û
>W1610914895
LSKO01000209
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
40726
40650
-
Pro
CGG
[ENA]
¡û
>W1610914950
LSKP01000008
Alphaproteobacteria
Sphingomonas sp. CCH13-B11 [LSKP]
26620
26696
+
Pro
CGG
[ENA]
¡û
>W1710074359
BCYX01000028
Alphaproteobacteria
Sphingomonas mali NBRC 15500 [BCYX]
52101
52025
-
Pro
CGG
[ENA]
¡û
>W1710074451
BCYZ01000063
Alphaproteobacteria
Sphingomonas pruni NBRC 15498 [BCYZ]
6110
6186
+
Pro
CGG
[ENA]
¡û
>W1710543440
FNZZ01000001
Alphaproteobacteria
Sphingomonas palmae JS21-1 [FNZZ]
501853
501929
+
Pro
CGG
[ENA]
¡û
>W1710546422
FOCF01000001
Alphaproteobacteria
Sphingomonas gellani S6-262 [FOCF]
449623
449547
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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