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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274026 (104 seq.)
>W131044159
AMQH01000018
Bacillota
Clostridium tunisiense TJ [AMQH]
18497
18422
-
Lys
TTT
[ENA]
¡û
>W131044188
AMQH01000025
Bacillota
Clostridium tunisiense TJ [AMQH]
3697
3622
-
Lys
TTT
[ENA]
¡û
>W131044189
AMQH01000026
Bacillota
Clostridium tunisiense TJ [AMQH]
5
80
+
Lys
TTT
[ENA]
¡û
>W131044191
AMQH01000032
Bacillota
Clostridium tunisiense TJ [AMQH]
3797
3722
-
Lys
TTT
[ENA]
¡û
>W131044199
AMQH01000036
Bacillota
Clostridium tunisiense TJ [AMQH]
1562
1487
-
Lys
TTT
[ENA]
¡û
>W1711090791
LTAY01000010
Bacillota
Clostridium thermobutyricum DSM 4928 [LTAY]
77537
77612
+
Lys
TTT
[ENA]
¡û
>W1711090799
LTAY01000010
Bacillota
Clostridium thermobutyricum DSM 4928 [LTAY]
78228
78303
+
Lys
TTT
[ENA]
¡û
>W1711090843
LTAY01000079
Bacillota
Clostridium thermobutyricum DSM 4928 [LTAY]
4439
4364
-
Lys
TTT
[ENA]
¡û
>W1711090844
LTAY01000079
Bacillota
Clostridium thermobutyricum DSM 4928 [LTAY]
4321
4246
-
Lys
TTT
[ENA]
¡û
>W1711090845
LTAY01000087
Bacillota
Clostridium thermobutyricum DSM 4928 [LTAY]
431
506
+
Lys
TTT
[ENA]
¡û
>W1711090852
LTAY01000087
Bacillota
Clostridium thermobutyricum DSM 4928 [LTAY]
1015
1090
+
Lys
TTT
[ENA]
¡û
>W131232689
AUJL01000015
Bacillota
Clostridium cadaveris AGR2141 [AUJL]
54210
54135
-
Lys
TTT
[ENA]
¡û
>WENV180144477
OAUA01016522
[OAUA] human gut metagenome; faeces
308
233
-
Lys
TTT
[ENA]
¢þ
>WENV180246696
OBDP01049152
[OBDP] human gut metagenome; human gut
119
194
+
Lys
TTT
[ENA]
¢þ
>WENV180509520
OCAV01030844
[OCAV] human gut metagenome; faeces
243
168
-
Lys
TTT
[ENA]
¢þ
>W141063517
APJA01000004
Bacillota
Clostridium intestinale URNW [APJA]
166342
166417
+
Lys
TTT
[ENA]
¡û
>W141063523
APJA01000005
Bacillota
Clostridium intestinale URNW [APJA]
159
234
+
Lys
TTT
[ENA]
¡û
>W141063545
APJA01000028
Bacillota
Clostridium intestinale URNW [APJA]
48340
48265
-
Lys
TTT
[ENA]
¡û
>W141063926
APJS01000012
Bacillota
Clostridium tetanomorphum DSM 665 [APJS]
9027
8952
-
Lys
TTT
[ENA]
¡û
>W141063947
APJS01000046
Bacillota
Clostridium tetanomorphum DSM 665 [APJS]
158
233
+
Lys
TTT
[ENA]
¡û
>W141063977
APJS01000131
Bacillota
Clostridium tetanomorphum DSM 665 [APJS]
222
297
+
Lys
TTT
[ENA]
¡û
>W141082936
AUPA01000044
Bacillota
Clostridium sp. BL8 [AUPA]
3978
3903
-
Lys
TTT
[ENA]
¡û
>W141082941
AUPA01000075
Bacillota
Clostridium sp. BL8 [AUPA]
4045
3970
-
Lys
TTT
[ENA]
¡û
>W141082950
AUPA01000081
Bacillota
Clostridium sp. BL8 [AUPA]
32848
32773
-
Lys
TTT
[ENA]
¡û
>W141082965
AUPA01000107
Bacillota
Clostridium sp. BL8 [AUPA]
556
631
+
Lys
TTT
[ENA]
¡û
>W141083000
AUPA01000244
Bacillota
Clostridium sp. BL8 [AUPA]
119
194
+
Lys
TTT
[ENA]
¡û
>WENV181005783
ODVZ01000371
[ODVZ] human metagenome; G_DNA_Posterior fornix
160
85
-
Lys
TTT
[ENA]
¢þ
>WENV181548121
OGIJ01028330
[OGIJ] metagenome; Human gut stool
456
381
-
Lys
TTT
[ENA]
¢þ
>W141239871
CAEV01000116
Bacillota
Clostridium senegalense JC122 [CAEV]
14799
14724
-
Lys
TTT
[ENA]
¡û
>W141239876
CAEV01000122
Bacillota
Clostridium senegalense JC122 [CAEV]
2380
2305
-
Lys
TTT
[ENA]
¡û
>W141239885
CAEV01000138
Bacillota
Clostridium senegalense JC122 [CAEV]
82
7
-
Lys
TTT
[ENA]
¡û
>W141239891
CAEV01000153
Bacillota
Clostridium senegalense JC122 [CAEV]
69
144
+
Lys
TTT
[ENA]
¡û
>WENV182439927
OIJW01003004
[OIJW] human gut metagenome; human gut
424
499
+
Lys
TTT
[ENA]
¢þ
>WENV182457368
OIND01005214
[OIND] human gut metagenome; human gut
146
71
-
Lys
TTT
[ENA]
¢þ
>WENV182466376
OIOP01003745
[OIOP] human gut metagenome; human gut
474
399
-
Lys
TTT
[ENA]
¢þ
>WENV182471547
OIPL01005909
[OIPL] human gut metagenome; human gut
311
236
-
Lys
TTT
[ENA]
¢þ
>W141265297
CCFF01000001
Bacillota
Clostridium culturomicium CL-6 [CCFF]
169
244
+
Lys
TTT
[ENA]
¡û
>W141265301
CCFF01000001
Bacillota
Clostridium culturomicium CL-6 [CCFF]
553
628
+
Lys
TTT
[ENA]
¡û
>W141265316
CCFF01000010
Bacillota
Clostridium culturomicium CL-6 [CCFF]
73
148
+
Lys
TTT
[ENA]
¡û
>W141265346
CCFF01000015
Bacillota
Clostridium culturomicium CL-6 [CCFF]
523882
523807
-
Lys
TTT
[ENA]
¡û
>W141265360
CCFF01000016
Bacillota
Clostridium culturomicium CL-6 [CCFF]
694804
694729
-
Lys
TTT
[ENA]
¡û
>W141265371
CCFF01000016
Bacillota
Clostridium culturomicium CL-6 [CCFF]
115745
115670
-
Lys
TTT
[ENA]
¡û
>W141265378
CCFF01000016
Bacillota
Clostridium culturomicium CL-6 [CCFF]
115146
115071
-
Lys
TTT
[ENA]
¡û
>W141265388
CCFF01000016
Bacillota
Clostridium culturomicium CL-6 [CCFF]
50576
50501
-
Lys
TTT
[ENA]
¡û
>WENV182963235
OKWQ01000006
[OKWQ] human gut metagenome; stool
507175
507100
-
Lys
TTT
[ENA]
¢þ
>WENV182993523
OLAZ01000701
[OLAZ] human gut metagenome; human gut
279
204
-
Lys
TTT
[ENA]
¢þ
>WENV183245802
OLRE01014038
[OLRE] human gut metagenome; faeces
606
681
+
Lys
TTT
[ENA]
¢þ
>WENV170660759
JXWU01026172
[JXWU] soil metagenome; rice field; organic control Plot
26
101
+
Lys
TTT
[ENA]
¢þ
>C191037286
CP025746
Bacillota
Clostridium manihotivorum CT4 [CP025746]
1315810
1315885
+
Lys
TTT
-
¡û
>C191037297
CP025746
Bacillota
Clostridium manihotivorum CT4 [CP025746]
1316831
1316906
+
Lys
TTT
-
¡û
>C191037338
CP025746
Bacillota
Clostridium manihotivorum CT4 [CP025746]
48014
47939
-
Lys
TTT
-
¡û
>C191184291
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
2944456
2944381
-
Lys
TTT
-
¡û
>C191184302
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
2943460
2943385
-
Lys
TTT
-
¡û
>C191184313
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
579118
579043
-
Lys
TTT
-
¡û
>W141806478
JPMD01000033
Bacillota
Clostridium sulfidigenes [JPMD]
61731
61656
-
Lys
TTT
[ENA]
¡û
>W141806483
JPMD01000044
Bacillota
Clostridium sulfidigenes [JPMD]
251
326
+
Lys
TTT
[ENA]
¡û
>W141806515
JPMD01000067
Bacillota
Clostridium sulfidigenes [JPMD]
144
219
+
Lys
TTT
[ENA]
¡û
>W141806524
JPMD01000070
Bacillota
Clostridium sulfidigenes [JPMD]
833
908
+
Lys
TTT
[ENA]
¡û
>W141806536
JPMD01000086
Bacillota
Clostridium sulfidigenes [JPMD]
333
408
+
Lys
TTT
[ENA]
¡û
>W1910213018
FMJL01000006
Bacillota
Clostridium sp. N3C [FMJL]
24272
24199
-
Lys
TTT
[ENA]
¡û
>W1910213028
FMJL01000006
Bacillota
Clostridium sp. N3C [FMJL]
23331
23256
-
Lys
TTT
[ENA]
¡û
>W1910213064
FMJL01000060
Bacillota
Clostridium sp. N3C [FMJL]
44
117
+
Lys
TTT
[ENA]
¡û
>W1911491710
OAOI01000040
Bacillota
Clostridium thiosulfatireducens [OAOI]
328
403
+
Lys
TTT
[ENA]
¡û
>W1911491724
OAOI01000062
Bacillota
Clostridium thiosulfatireducens [OAOI]
1365
1290
-
Lys
TTT
[ENA]
¡û
>W1911491749
OAOI01000163
Bacillota
Clostridium thiosulfatireducens [OAOI]
119886
119811
-
Lys
TTT
[ENA]
¡û
>W1911491757
OAOI01000171
Bacillota
Clostridium thiosulfatireducens [OAOI]
123
198
+
Lys
TTT
[ENA]
¡û
>W1911491758
OAOI01000181
Bacillota
Clostridium thiosulfatireducens [OAOI]
118
193
+
Lys
TTT
[ENA]
¡û
>W1911493753
OBJM01000006
Bacillota
Clostridium cadaveris LH052 [OBJM]
147551
147476
-
Lys
TTT
[ENA]
¡û
>W1911493759
OBJM01000007
Bacillota
Clostridium cadaveris LH052 [OBJM]
18326
18251
-
Lys
TTT
[ENA]
¡û
>W1911493777
OBJM01000007
Bacillota
Clostridium cadaveris LH052 [OBJM]
16655
16580
-
Lys
TTT
[ENA]
¡û
>W1911493822
OBJM01000045
Bacillota
Clostridium cadaveris LH052 [OBJM]
335
260
-
Lys
TTT
[ENA]
¡û
>W1510060541
CCXK01000001
Bacillota
Clostridium culturomicium CL-6 [CCXK]
169
244
+
Lys
TTT
[ENA]
¡û
>W1510060545
CCXK01000001
Bacillota
Clostridium culturomicium CL-6 [CCXK]
553
628
+
Lys
TTT
[ENA]
¡û
>W1510060560
CCXK01000010
Bacillota
Clostridium culturomicium CL-6 [CCXK]
73
148
+
Lys
TTT
[ENA]
¡û
>W1510060590
CCXK01000015
Bacillota
Clostridium culturomicium CL-6 [CCXK]
523882
523807
-
Lys
TTT
[ENA]
¡û
>W1510060604
CCXK01000016
Bacillota
Clostridium culturomicium CL-6 [CCXK]
694804
694729
-
Lys
TTT
[ENA]
¡û
>W1510060615
CCXK01000016
Bacillota
Clostridium culturomicium CL-6 [CCXK]
115745
115670
-
Lys
TTT
[ENA]
¡û
>W1510060622
CCXK01000016
Bacillota
Clostridium culturomicium CL-6 [CCXK]
115146
115071
-
Lys
TTT
[ENA]
¡û
>W1510060632
CCXK01000016
Bacillota
Clostridium culturomicium CL-6 [CCXK]
50576
50501
-
Lys
TTT
[ENA]
¡û
>W1510755126
CYSK01000012
Bacillota
Desnuesiella massiliensis mt10 [CYSK]
266
341
+
Lys
TTT
[ENA]
¡û
>W1510755134
CYSK01000013
Bacillota
Desnuesiella massiliensis mt10 [CYSK]
871589
871664
+
Lys
TTT
[ENA]
¡û
>W1510755170
CYSO01000008
Bacillota
Clostridium massiliamazoniense ND2 [CYSO]
28849
28774
-
Lys
TTT
[ENA]
¡û
>W1510755173
CYSO01000008
Bacillota
Clostridium massiliamazoniense ND2 [CYSO]
1322
1247
-
Lys
TTT
[ENA]
¡û
>W1510755219
CYSO01000011
Bacillota
Clostridium massiliamazoniense ND2 [CYSO]
1466426
1466351
-
Lys
TTT
[ENA]
¡û
>W1510755252
CYSO01000012
Bacillota
Clostridium massiliamazoniense ND2 [CYSO]
94419
94494
+
Lys
TTT
[ENA]
¡û
>W1511187042
JMFY01000066
Bacillota
Clostridium sp. HMP27 [JMFY]
28
103
+
Lys
TTT
[ENA]
¡û
>W1610030344
AYSO01000001
Bacillota
Clostridium argentinense CDC 2741 [AYSO]
511
586
+
Lys
TTT
[ENA]
¡û
>W1610030348
AYSO01000008
Bacillota
Clostridium argentinense CDC 2741 [AYSO]
1106
1181
+
Lys
TTT
[ENA]
¡û
>W1610061762
BCMW01000008
Bacillota
Sarcina ventriculi [BCMW]
442
517
+
Lys
TTT
[ENA]
¡û
>W1610061769
BCMW01000012
Bacillota
Sarcina ventriculi [BCMW]
1
76
+
Lys
TTT
[ENA]
¡û
>W1610061770
BCMW01000013
Bacillota
Sarcina ventriculi [BCMW]
1
76
+
Lys
TTT
[ENA]
¡û
>W1710027467
AYSO01000001
Bacillota
Clostridium argentinense CDC 2741 [AYSO]
511
586
+
Lys
TTT
[ENA]
¡û
>W1710027471
AYSO01000008
Bacillota
Clostridium argentinense CDC 2741 [AYSO]
1106
1181
+
Lys
TTT
[ENA]
¡û
>W1710059427
BCMW01000008
Bacillota
Sarcina ventriculi [BCMW]
442
517
+
Lys
TTT
[ENA]
¡û
>W1710059434
BCMW01000012
Bacillota
Sarcina ventriculi [BCMW]
1
76
+
Lys
TTT
[ENA]
¡û
>W1710059435
BCMW01000013
Bacillota
Sarcina ventriculi [BCMW]
1
76
+
Lys
TTT
[ENA]
¡û
>W1710556620
FOKI01000057
Bacillota
Clostridium frigidicarnis [FOKI]
15925
15850
-
Lys
TTT
[ENA]
¡û
>W1710556630
FOKI01000094
Bacillota
Clostridium frigidicarnis [FOKI]
2244
2169
-
Lys
TTT
[ENA]
¡û
>W1710561444
FOOE01000009
Bacillota
Clostridium cadaveris [FOOE]
106864
106939
+
Lys
TTT
[ENA]
¡û
>W1710561462
FOOE01000014
Bacillota
Clostridium cadaveris [FOOE]
92859
92784
-
Lys
TTT
[ENA]
¡û
>W1710587184
FQXU01000021
Bacillota
Clostridium intestinale DSM 6191 [FQXU]
329
404
+
Lys
TTT
[ENA]
¡û
>W1710588688
FQZO01000004
Bacillota
Clostridium amylolyticum [FQZO]
44574
44499
-
Lys
TTT
[ENA]
¡û
>W1710588717
FQZO01000011
Bacillota
Clostridium amylolyticum [FQZO]
236
311
+
Lys
TTT
[ENA]
¡û
>W1710602331
FUYD01000003
Bacillota
Clostridium sp. USBA 49 [FUYD]
268721
268646
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK