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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274031 (107 seq.)
>W1711120601
LUGK01000042
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
619
544
-
Asp
GTC
[ENA]
¡û
>W1711167828
LVWX01000039
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWX]
619
544
-
Asp
GTC
[ENA]
¡û
>W1711167858
LVWY01000007
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWY]
286
361
+
Asp
GTC
[ENA]
¡û
>W131204359
ATBQ01000223
Bacillota
Lactobacillus delbrueckii subsp. lactis CRL581 [ATBQ]
17131
17056
-
Asp
GTC
[ENA]
¡û
>W1711665860
MRBF01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [MRBF]
43439
43514
+
Asp
GTC
[ENA]
¡û
>W1711665891
MRBF01000002
Bacillota
Lactobacillus delbrueckii subsp. lactis [MRBF]
1336109
1336184
+
Asp
GTC
[ENA]
¡û
>W1711665918
MRBF01000002
Bacillota
Lactobacillus delbrueckii subsp. lactis [MRBF]
2210259
2210184
-
Asp
GTC
[ENA]
¡û
>W1711665982
MRBF01000003
Bacillota
Lactobacillus delbrueckii subsp. lactis [MRBF]
717
642
-
Asp
GTC
[ENA]
¡û
>W1711678820
MRUN01000012
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [MRUN]
1314033
1313958
-
Asp
GTC
[ENA]
¡û
>W1711678859
MRUN01000012
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [MRUN]
501485
501410
-
Asp
GTC
[ENA]
¡û
>C171048689
CP016393
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND04 [CP016393]
1235074
1235149
+
Asp
GTC
-
¡û
>C171048743
CP016393
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND04 [CP016393]
166898
166823
-
Asp
GTC
-
¡û
>C171074199
CP018156
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3035 [CP018156]
1897789
1897864
+
Asp
GTC
-
¡û
>C171074237
CP018156
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3035 [CP018156]
738344
738269
-
Asp
GTC
-
¡û
>C171075478
CP018215
Bacillota
Lactobacillus delbrueckii subsp. lactis KCCM 34717 [CP018215]
30209
30284
+
Asp
GTC
-
¡û
>C171075547
CP018215
Bacillota
Lactobacillus delbrueckii subsp. lactis KCCM 34717 [CP018215]
901797
901722
-
Asp
GTC
-
¡û
>C171075576
CP018216
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii KCTC 13731 [CP018216]
843685
843760
+
Asp
GTC
-
¡û
>C171075605
CP018216
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii KCTC 13731 [CP018216]
1577377
1577302
-
Asp
GTC
-
¡û
>C171075661
CP018217
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [CP018217]
857967
858042
+
Asp
GTC
-
¡û
>C171075698
CP018217
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [CP018217]
1661758
1661683
-
Asp
GTC
-
¡û
>C171075757
CP018218
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [CP018218]
1174079
1174154
+
Asp
GTC
-
¡û
>C171075784
CP018218
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [CP018218]
1883241
1883166
-
Asp
GTC
-
¡û
>C171075848
CP018218
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [CP018218]
57932
57857
-
Asp
GTC
-
¡û
>C171081360
CP018614
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [CP018614]
1631434
1631359
-
Asp
GTC
-
¡û
>C171081396
CP018614
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [CP018614]
1292982
1292907
-
Asp
GTC
-
¡û
>C171089409
CP019120
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus DSM 20080 [CP019120]
797402
797477
+
Asp
GTC
-
¡û
>C171089445
CP019120
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus DSM 20080 [CP019120]
1569844
1569769
-
Asp
GTC
-
¡û
>C171116205
CP021136
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii TUA4408L [CP021136]
1901876
1901951
+
Asp
GTC
-
¡û
>C171116246
CP021136
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii TUA4408L [CP021136]
708824
708749
-
Asp
GTC
-
¡û
>C011365
CR954253
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [CR954253]
815087
815160
+
Asp
GTC
[Ensembl]
¡û
>C011402
CR954253
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [CR954253]
1566552
1566479
-
Asp
GTC
[Ensembl]
¡û
>C011520
CP000412
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [CP000412]
801425
801498
+
Asp
GTC
[Ensembl]
¡û
>C011554
CP000412
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [CP000412]
1585262
1585189
-
Asp
GTC
[Ensembl]
¡û
>W141037903
ALPY01000026
Bacillota
Lactobacillus delbrueckii ZN7a-9 [ALPY]
9639
9714
+
Asp
GTC
[ENA]
¡û
>WENV180632182
OCQY01235724
[OCQY] human gut metagenome; human gut
194
119
-
Asp
GTC
[ENA]
¢þ
>WENV181659957
OGOF01001991
[OGOF] human gut metagenome; faeces
5755
5830
+
Asp
GTC
[ENA]
¢þ
>WENV182293947
OHWC01036288
[OHWC] human gut metagenome; feces
69
144
+
Asp
GTC
[ENA]
¢þ
>W141228050
BALP01000138
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii JCM 1012 [BALP]
619
544
-
Asp
GTC
[ENA]
¡û
>WENV182372240
OICV01012175
[OICV] human gut metagenome; feces
69
144
+
Asp
GTC
[ENA]
¢þ
>WENV182381859
OIDR01000394
[OIDR] human gut metagenome; feces
13192
13116
-
Asp
GTC
[ENA]
¢þ
>W141264069
CCDV01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDV]
995469
995544
+
Asp
GTC
[ENA]
¡û
>W141264945
CCET01000007
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCET]
3781
3856
+
Asp
GTC
[ENA]
¡û
>W141264980
CCET01000010
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCET]
5437
5512
+
Asp
GTC
[ENA]
¡û
>W141265025
CCEU01000004
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCEU]
3814
3889
+
Asp
GTC
[ENA]
¡û
>W141265062
CCEU01000010
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCEU]
5424
5499
+
Asp
GTC
[ENA]
¡û
>WENV183166446
OLOY01000037
[OLOY] human gut metagenome; faeces
112952
113028
+
Asp
GTC
[ENA]
¢þ
>WENV183785846
PPYF01298418
[PPYF] human gut metagenome; stool from patient with Crohn's disease
81
156
+
Asp
GTC
[ENA]
¢þ
>WENV170957091
MJUQ01009065
[MJUQ] soil metagenome; viral particles from soil sample PT1
266
191
-
Asp
GTC
[ENA]
¢þ
>C181024954
CP017235
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus L99 [CP017235]
792692
792767
+
Asp
GTC
-
¡û
>C181024991
CP017235
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus L99 [CP017235]
1564557
1564482
-
Asp
GTC
-
¡û
>C181074504
CP022988
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [CP022988]
387578
387653
+
Asp
GTC
-
¡û
>C181074543
CP022988
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [CP022988]
1200170
1200245
+
Asp
GTC
-
¡û
>C181076030
CP023139
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3034 [CP023139]
958477
958552
+
Asp
GTC
-
¡û
>C181076068
CP023139
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3034 [CP023139]
1832608
1832533
-
Asp
GTC
-
¡û
>C181221062
LT899687
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LT899687]
795173
795248
+
Asp
GTC
-
¡û
>C181221099
LT899687
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LT899687]
1571114
1571039
-
Asp
GTC
-
¡û
>C191063398
CP029250
Bacillota
Lactobacillus delbrueckii [CP029250]
996425
996500
+
Asp
GTC
-
¡û
>C191063435
CP029250
Bacillota
Lactobacillus delbrueckii [CP029250]
1885269
1885194
-
Asp
GTC
-
¡û
>C191089988
CP032451
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus KLDS1.0207 [CP032451]
1257414
1257489
+
Asp
GTC
-
¡û
>C191090042
CP032451
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus KLDS1.0207 [CP032451]
126130
126055
-
Asp
GTC
-
¡û
>C191224675
LS991409
Bacillota
Lactobacillus delbrueckii subsp. lactis [LS991409]
865398
865473
+
Asp
GTC
-
¡û
>C191224712
LS991409
Bacillota
Lactobacillus delbrueckii subsp. lactis [LS991409]
1696842
1696767
-
Asp
GTC
-
¡û
>W09101785
AAGQ01000078
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [AAGQ]
2619
2544
-
Asp
GTC
[ENA]
¡û
>W1910180932
BJLM01000097
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii NBRC 3534 [BJLM]
618
543
-
Asp
GTC
[ENA]
¡û
>W1910181019
BJLO01000188
Bacillota
Lactobacillus delbrueckii subsp. lactis NBRC 3734 [BJLO]
87
162
+
Asp
GTC
[ENA]
¡û
>W1910182525
BJMY01000056
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus NBRC 13953 [BJMY]
618
543
-
Asp
GTC
[ENA]
¡û
>W1910186314
CCDS01000014
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDS]
10877
10952
+
Asp
GTC
[ENA]
¡û
>W1910186331
CCDS01000023
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDS]
1006
931
-
Asp
GTC
[ENA]
¡û
>W1910186359
CCDT01000002
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDT]
3793
3868
+
Asp
GTC
[ENA]
¡û
>W1910186404
CCDT01000008
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDT]
10646
10721
+
Asp
GTC
[ENA]
¡û
>W1910186463
CCDU01000022
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDU]
10902
10977
+
Asp
GTC
[ENA]
¡û
>W1911631569
PUFG01000021
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii DSM 26046 [PUFG]
9823
9898
+
Asp
GTC
[ENA]
¡û
>W1911631595
PUFG01000037
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii DSM 26046 [PUFG]
288
363
+
Asp
GTC
[ENA]
¡û
>W1911631605
PUFG01000039
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii DSM 26046 [PUFG]
17997
17922
-
Asp
GTC
[ENA]
¡û
>W1911702101
QNXB01000049
Bacillota
Lactobacillus delbrueckii TJA31 [QNXB]
79
154
+
Asp
GTC
[ENA]
¡û
>W1810000539
BEWJ01000099
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii NBRC 3202 [BEWJ]
222
297
+
Asp
GTC
[ENA]
¡û
>W1810190912
PKKE01000023
Bacillota
Lactobacillus delbrueckii UMB0003 [PKKE]
22899
22824
-
Asp
GTC
[ENA]
¡û
>W10124024
AEAT01000059
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 [AEAT]
206
281
+
Asp
GTC
[ENA]
¡û
>C11112451
CP000156
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus 2038 [CP000156]
799489
799564
+
Asp
GTC
[Ensembl]
¡û
>C11112467
CP000156
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus 2038 [CP000156]
829886
829961
+
Asp
GTC
[Ensembl]
¡û
>C11112532
CP002341
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND02 [CP002341]
867373
867448
+
Asp
GTC
[Ensembl]
¡û
>C11112571
CP002341
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND02 [CP002341]
1769073
1768998
-
Asp
GTC
[Ensembl]
¡û
>W11130861
AEAT01000059
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 [AEAT]
206
281
+
Asp
GTC
[ENA]
¡û
>W1511510287
JXRV01000040
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CRL871 [JXRV]
59081
59006
-
Asp
GTC
[ENA]
¡û
>W1511510356
JXRV01000496
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CRL871 [JXRV]
602
527
-
Asp
GTC
[ENA]
¡û
>W11152227
AEXU01000060
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AEXU]
611
536
-
Asp
GTC
[ENA]
¡û
>W1511694287
LGAS01000049
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [LGAS]
13127
13052
-
Asp
GTC
[ENA]
¡û
>W1511698338
LGHR01000023
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [LGHR]
758
683
-
Asp
GTC
[ENA]
¡û
>C161057571
CP013610
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus MN-BM-F01 [CP013610]
812819
812894
+
Asp
GTC
[Ensembl]
¡û
>C161057602
CP013610
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus MN-BM-F01 [CP013610]
1597439
1597364
-
Asp
GTC
[Ensembl]
¡û
>W121009804
AGFO01000053
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632 [AGFO]
618
543
-
Asp
GTC
[ENA]
¡û
>W121010011
AGHW01000004
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519 [AGHW]
202
277
+
Asp
GTC
[ENA]
¡û
>W1610033135
AZCR01000123
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
283
358
+
Asp
GTC
[ENA]
¡û
>W1610036651
AZFL01000065
Bacillota
Lactobacillus delbrueckii subsp. indicus DSM 15996 [AZFL]
272
347
+
Asp
GTC
[ENA]
¡û
>W1610044407
BBAN01000009
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [BBAN]
202
277
+
Asp
GTC
[ENA]
¡û
>W1610045865
BBBW01000109
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [BBBW]
530
455
-
Asp
GTC
[ENA]
¡û
>W1610502792
FLLT01000006
Bacillota
Lactobacillus delbrueckii [FLLT]
820451
820376
-
Asp
GTC
[ENA]
¡û
>W1610502811
FLLT01000006
Bacillota
Lactobacillus delbrueckii [FLLT]
666962
666887
-
Asp
GTC
[ENA]
¡û
>W1610527998
JQAV01000064
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 DSM 20081 [JQAV]
131
56
-
Asp
GTC
[ENA]
¡û
>W1610931798
LUGK01000042
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
619
544
-
Asp
GTC
[ENA]
¡û
>W1610977897
LVWX01000039
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWX]
619
544
-
Asp
GTC
[ENA]
¡û
>W1610977927
LVWY01000007
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWY]
286
361
+
Asp
GTC
[ENA]
¡û
>W1710030407
AZCR01000123
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
283
358
+
Asp
GTC
[ENA]
¡û
>W1710033690
AZFL01000065
Bacillota
Lactobacillus delbrueckii subsp. indicus DSM 15996 [AZFL]
272
347
+
Asp
GTC
[ENA]
¡û
>W1710042706
BBBW01000109
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [BBBW]
530
455
-
Asp
GTC
[ENA]
¡û
>W1710496191
FLLT01000006
Bacillota
Lactobacillus delbrueckii [FLLT]
820451
820376
-
Asp
GTC
[ENA]
¡û
>W1710496210
FLLT01000006
Bacillota
Lactobacillus delbrueckii [FLLT]
666962
666887
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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