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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274063 (105 seq.)
>W1710893312
LNEP01000012
Betaproteobacteria
Betaproteobacteria bacterium Ga0077540 [LNEP]
95887
95811
-
Arg
ACG
[ENA]
¡û
>W1711135913
LUZQ01000002
Betaproteobacteria
Burkholderiales bacterium Beta_01 [LUZQ]
28763
28687
-
Arg
ACG
[ENA]
¡û
>W1711223936
LXTQ01000057
Betaproteobacteria
Methylobacillus sp. MM3 MM2 [LXTQ]
4203
4279
+
Arg
ACG
[ENA]
¡û
>W1711339996
MCAW01000008
Betaproteobacteria
Methylophilales bacterium LSUCC0135 [MCAW]
64892
64968
+
Arg
ACG
[ENA]
¡û
>W1711387323
MEGN01000003
Betaproteobacteria
Thiobacillus sp. SCN 65-179 [MEGN]
402758
402834
+
Arg
ACG
[ENA]
¡û
>W1711504026
MKUE01000005
Betaproteobacteria
Thiobacillus sp. 65-1059 [MKUE]
49155
49231
+
Arg
ACG
[ENA]
¡û
>W1711504080
MKUF01000010
Betaproteobacteria
Thiobacillus sp. 65-69 [MKUF]
402302
402378
+
Arg
ACG
[ENA]
¡û
>W1711506563
MKWN01000004
Betaproteobacteria
Thiobacillus sp. 65-29 [MKWN]
2343
2267
-
Arg
ACG
[ENA]
¡û
>W1711680566
MRWL01000661
Betaproteobacteria
Sulfuricella sp. BIN3 [MRWL]
948
1024
+
Arg
ACG
[ENA]
¡û
>C171115900
CP021111
Betaproteobacteria
Bordetella genomosp. 13 AU7206 [CP021111]
2587659
2587583
-
Arg
ACG
-
¡û
>C171115901
CP021111
Betaproteobacteria
Bordetella genomosp. 13 AU7206 [CP021111]
2564541
2564465
-
Arg
ACG
-
¡û
>W131186410
ARWC01000001
Betaproteobacteria
Methylotenera sp. 1P/1 [ARWC]
1382904
1382828
-
Arg
ACG
[ENA]
¡û
>W131220795
ATZU01000080
Betaproteobacteria
beta proteobacterium SCGC AAA028-K02 [ATZU]
34422
34346
-
Arg
ACG
[ENA]
¡û
>W131220896
ATZZ01000007
Betaproteobacteria
Chitinimonas koreensis DSM 17726 [ATZZ]
84372
84448
+
Arg
ACG
[ENA]
¡û
>W131220897
ATZZ01000007
Betaproteobacteria
Chitinimonas koreensis DSM 17726 [ATZZ]
84479
84555
+
Arg
ACG
[ENA]
¡û
>C025412
CP000116
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [CP000116]
1032097
1032021
-
Arg
ACG
[Ensembl]
¡û
>w020496
AAUX01000001
Betaproteobacteria
Methylophilales bacterium HTCC2181 [AAUX]
437731
437653
-
Arg
ACG
[ENA]
¡û
>WENV180111284
OAPN01052898
[OAPN] marine metagenome; 2011
128
52
-
Arg
ACG
[ENA]
¢þ
>WENV180114442
OAPS01010192
[OAPS] marine metagenome; sea water
496
420
-
Arg
ACG
[ENA]
¢þ
>WENV180209101
OBAK01016787
[OBAK] marine metagenome; ENVO.00002150
450
374
-
Arg
ACG
[ENA]
¢þ
>WENV180267664
OBEQ011879601
[OBEQ] groundwater metagenome; groundwater
153
229
+
Arg
ACG
[ENA]
¢þ
>WENV180296047
OBIZ01605847
[OBIZ] soil metagenome; soil
50
126
+
Arg
ACG
[ENA]
¢þ
>WENV180351992
OBLQ010142175
[OBLQ] soil metagenome; soil
702
778
+
Arg
ACG
[ENA]
¢þ
>WENV180361797
OBNW01001899
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
977
1053
+
Arg
ACG
[ENA]
¢þ
>WENV180363658
OBNY01171793
[OBNY] marine metagenome; ENVO:00002010
69
145
+
Arg
ACG
[ENA]
¢þ
>WENV180363735
OBNZ01002847
[OBNZ] marine metagenome; ENVO:00002010
1017
941
-
Arg
ACG
[ENA]
¢þ
>WENV180366112
OBOC01135303
[OBOC] marine metagenome; ocean water
63
139
+
Arg
ACG
[ENA]
¢þ
>WENV180366999
OBOE01002935
[OBOE] marine metagenome; ENVO:00002010
290
214
-
Arg
ACG
[ENA]
¢þ
>WENV180369878
OBOH01008092
[OBOH] marine metagenome; ENVO:00002010
297
221
-
Arg
ACG
[ENA]
¢þ
>WENV180391925
OBPN01107689
[OBPN] marine metagenome; seawater
152
228
+
Arg
ACG
[ENA]
¢þ
>WENV180393725
OBPR01003234
[OBPR] marine metagenome; ENVO:00002042
136
212
+
Arg
ACG
[ENA]
¢þ
>WENV180591364
OCOV01014399
[OCOV] marine metagenome; ENVO:01000301
218
294
+
Arg
ACG
[ENA]
¢þ
>WENV181144290
OEHO01001566
[OEHO] metagenome; unknown
278
202
-
Arg
ACG
[ENA]
¢þ
>WENV181187818
OEOE01000039
[OEOE] activated sludge metagenome; Activated Sludge
14357
14281
-
Arg
ACG
[ENA]
¢þ
>WENV181189048
OEOF01000034
[OEOF] activated sludge metagenome; Activated Sludge
22203
22127
-
Arg
ACG
[ENA]
¢þ
>WENV181222661
OFDC01000054
[OFDC] hot springs metagenome; Water
59982
59906
-
Arg
ACG
[ENA]
¢þ
>WENV181226719
OFDN01000020
[OFDN] hot springs metagenome; Water
153601
153677
+
Arg
ACG
[ENA]
¢þ
>WENV181231548
OFEK01036213
[OFEK] activated sludge metagenome; Anaerobic digester
602
526
-
Arg
ACG
[ENA]
¢þ
>WENV181292837
OFHF01026984
[OFHF] soil metagenome; Clay
498
574
+
Arg
ACG
[ENA]
¢þ
>WENV181293445
OFHG01003701
[OFHG] soil metagenome; Clay
2359
2435
+
Arg
ACG
[ENA]
¢þ
>WENV181294710
OFHH01030218
[OFHH] soil metagenome; Clay
422
498
+
Arg
ACG
[ENA]
¢þ
>WENV181297495
OFHK01054665
[OFHK] soil metagenome; Clay
804
728
-
Arg
ACG
[ENA]
¢þ
>WENV181368968
OFQN01006576
[OFQN] freshwater metagenome; Freshwater Lake
139
63
-
Arg
ACG
[ENA]
¢þ
>WENV181377160
OFRA01003154
[OFRA] wastewater metagenome; Lake Maggiore Verbania
109
33
-
Arg
ACG
[ENA]
¢þ
>WENV181380274
OFRD01050305
[OFRD] wastewater metagenome; Exp Tend CN 100WW
82
6
-
Arg
ACG
[ENA]
¢þ
>WENV181386514
OFRL01005639
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
646
570
-
Arg
ACG
[ENA]
¢þ
>WENV181400352
OFSF01004994
[OFSF] wastewater metagenome; Exp Tend VB 100WW
170
94
-
Arg
ACG
[ENA]
¢þ
>WENV181414520
OGCL01000561
[OGCL] hot springs metagenome; Hot spring water
24015
24091
+
Arg
ACG
[ENA]
¢þ
>WENV181835547
OGVI01002977
[OGVI] freshwater metagenome; freshwater
1396
1472
+
Arg
ACG
[ENA]
¢þ
>WENV181838486
OGVN01000950
[OGVN] freshwater metagenome; freshwater
2056
2132
+
Arg
ACG
[ENA]
¢þ
>WENV182575860
OJFX01000014
[OJFX] seawater metagenome; Sea water
30175
30099
-
Arg
ACG
[ENA]
¢þ
>WENV001894
AACY020053671
Marine microbial communities from Global Ocean Sampling (GOS)
263
341
+
Arg
ACG
[ENA]
>W141350155
JCKJ01000001
Betaproteobacteria
Methylophilaceae bacterium 11 [JCKJ]
2260760
2260684
-
Arg
ACG
[ENA]
¡û
>WENV170006735
AMWB02048397
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
1255
1331
+
Arg
ACG
[ENA]
¢þ
>WENV170166945
CEOO01109499
[CEOO] marine metagenome genome assembly TARA_036_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1342
1418
+
Arg
ACG
[ENA]
¢þ
>WENV170553439
CXWK01018267
[CXWK] wastewater metagenome; activated sludge
1074
998
-
Arg
ACG
[ENA]
¢þ
>WENV170573360
FLYK01012668
[FLYK] hot springs metagenome; Sediment
306
382
+
Arg
ACG
[ENA]
¢þ
>WENV170574816
FLYN01010838
[FLYN] hot springs metagenome; Sediment
816
892
+
Arg
ACG
[ENA]
¢þ
>WENV170613018
FUWD012773157
[FUWD] metagenome; unknown
212
136
-
Arg
ACG
[ENA]
¢þ
>WENV170654529
JRYL01000207
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
4457
4381
-
Arg
ACG
[ENA]
¢þ
>WENV170668963
LAHR01000571
[LAHR] activated sludge metagenome; Sample C-3; Sludge from acetogenic chamber (third chamber) of Anaerobic Baffled Reactor over
2449
2373
-
Arg
ACG
[ENA]
¢þ
>WENV170670531
LAHT01034134
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
1604
1680
+
Arg
ACG
[ENA]
¢þ
>WENV170708958
LNFM01000048
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
256772
256848
+
Arg
ACG
[ENA]
¢þ
>WENV170834220
MDSZ01093943
[MDSZ] marine metagenome; seawater
15165
15241
+
Arg
ACG
[ENA]
¢þ
>WENV170842267
MDSZ01237074
[MDSZ] marine metagenome; seawater
86007
85931
-
Arg
ACG
[ENA]
¢þ
>WENV170932776
MDTG01209189
[MDTG] marine metagenome; seawater
4224
4300
+
Arg
ACG
[ENA]
¢þ
>WENV170948821
MEHZ011288299
[MEHZ] marine metagenome; marine surface water
226
150
-
Arg
ACG
[ENA]
¢þ
>WENV170961387
MLJW01000021
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
124851
124775
-
Arg
ACG
[ENA]
¢þ
>C181106473
CP024847
Betaproteobacteria
Aquella oligotrophica DSM 100970 [CP024847]
800228
800152
-
Arg
ACG
-
¡û
>WENV023936
AACY020766835
Marine microbial communities from Global Ocean Sampling (GOS)
154
232
+
Arg
ACG
[ENA]
>W09101567
AAFH01000001
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [AAFH]
870109
870185
+
Arg
ACG
[ENA]
¡û
>W09111757
ABXG01000003
Betaproteobacteria
beta proteobacterium KB13 [ABXG]
87333
87257
-
Arg
ACG
[ENA]
¡û
>W141817334
JQKP01000005
Betaproteobacteria
Ferriphaselus sp. R-1 [JQKP]
13623
13699
+
Arg
ACG
[ENA]
¡û
>W1910015387
BDOQ01000006
Betaproteobacteria
Novimethylophilus kurashikiensis La2-4 [BDOQ]
261294
261370
+
Arg
ACG
[ENA]
¡û
>W1910728388
MGWX01000221
Betaproteobacteria
Gallionellales bacterium RIFCSPLOWO2_02_58_13 [MGWX]
10900
10824
-
Arg
ACG
[ENA]
¡û
>W1910728508
MGXC01000036
Betaproteobacteria
Gallionellales bacterium RIFCSPLOWO2_12_FULL_59_22 [MGXC]
31354
31430
+
Arg
ACG
[ENA]
¡û
>W1910730007
MHBT01000026
Betaproteobacteria
Methylophilales bacterium RIFCSPHIGHO2_02_FULL_57_10 [MHBT]
2104
2028
-
Arg
ACG
[ENA]
¡û
>W1810068127
PDZH01000092
Betaproteobacteria
Chitinimonas sp. BJB300 [PDZH]
6331
6407
+
Arg
ACG
[ENA]
¡û
>W1810068128
PDZH01000092
Betaproteobacteria
Chitinimonas sp. BJB300 [PDZH]
6433
6509
+
Arg
ACG
[ENA]
¡û
>C151104251
LN827929
Betaproteobacteria
Candidatus Methylopumilus planktonicus MMS-10A-171 [LN827929]
1078772
1078848
+
Arg
ACG
[Ensembl]
¡û
>ENV09000422
ABSN01066516
Freshwater sediment metagenome lwFormaldehyde_C1
507
431
-
Arg
ACG
[ENA]
¡û
>WENV042808
AACY022266587
Marine microbial communities from Global Ocean Sampling (GOS)
373
295
-
Arg
ACG
[ENA]
>W1511431986
JUGE01000001
Betaproteobacteria
Methylotenera sp. N17 [JUGE]
1918538
1918462
-
Arg
ACG
[ENA]
¡û
>WENV046588
AACY022609812
Marine microbial communities from Global Ocean Sampling (GOS)
310
388
+
Arg
ACG
[ENA]
>C161030830
CP011001
Betaproteobacteria
Methylophilales bacterium MBRSF5 [CP011001]
974203
974279
+
Arg
ACG
[Ensembl]
¡û
>C161030872
CP011002
Betaproteobacteria
Methylophilales bacterium MBRS-H7 [CP011002]
944420
944344
-
Arg
ACG
[Ensembl]
¡û
>C161030906
CP011003
Betaproteobacteria
Methylophilales bacterium MBRSG12 [CP011003]
944420
944344
-
Arg
ACG
[Ensembl]
¡û
>WENV006020
AACY020166872
Marine microbial communities from Global Ocean Sampling (GOS)
291
369
+
Arg
ACG
[ENA]
>W1610447615
FKBS01000029
Betaproteobacteria
Bordetella ansorpii [FKBS]
935912
935836
-
Arg
ACG
[ENA]
¡û
>W1610447616
FKBS01000029
Betaproteobacteria
Bordetella ansorpii [FKBS]
913557
913481
-
Arg
ACG
[ENA]
¡û
>W1610459342
FKIF01000001
Betaproteobacteria
Bordetella ansorpii [FKIF]
55967
55891
-
Arg
ACG
[ENA]
¡û
>W1610459343
FKIF01000001
Betaproteobacteria
Bordetella ansorpii [FKIF]
31344
31268
-
Arg
ACG
[ENA]
¡û
>WENV000656
AACY020020022
Marine microbial communities from Global Ocean Sampling (GOS)
754
832
+
Arg
ACG
[ENA]
>W1610626252
LIBY01000129
Betaproteobacteria
Methylophilales bacterium BACL14 MAG-120910-bin43 [LIBY]
1193
1269
+
Arg
ACG
[ENA]
¡û
>W1610627181
LIDI01000020
Betaproteobacteria
Methylophilales bacterium BACL14 MAG-120920-bin58 [LIDI]
1707
1783
+
Arg
ACG
[ENA]
¡û
>W1610753578
LNEP01000012
Betaproteobacteria
Betaproteobacteria bacterium Ga0077540 [LNEP]
95887
95811
-
Arg
ACG
[ENA]
¡û
>WENV076383
AACY024096157
Marine microbial communities from Global Ocean Sampling (GOS)
382
460
+
Arg
ACG
[ENA]
>W1610947033
LUZQ01000002
Betaproteobacteria
Burkholderiales bacterium Beta_01 [LUZQ]
28763
28687
-
Arg
ACG
[ENA]
¡û
>W1611008307
LXTQ01000057
Betaproteobacteria
Methylobacillus sp. MM3 MM2 [LXTQ]
4203
4279
+
Arg
ACG
[ENA]
¡û
>W1710447243
FKBS01000029
Betaproteobacteria
Bordetella ansorpii [FKBS]
935912
935836
-
Arg
ACG
[ENA]
¡û
>W1710447244
FKBS01000029
Betaproteobacteria
Bordetella ansorpii [FKBS]
913557
913481
-
Arg
ACG
[ENA]
¡û
>W1710458970
FKIF01000001
Betaproteobacteria
Bordetella ansorpii [FKIF]
55967
55891
-
Arg
ACG
[ENA]
¡û
>W1710458971
FKIF01000001
Betaproteobacteria
Bordetella ansorpii [FKIF]
31344
31268
-
Arg
ACG
[ENA]
¡û
>W1710757379
LIBY01000129
Betaproteobacteria
Methylophilales bacterium BACL14 MAG-120910-bin43 [LIBY]
1193
1269
+
Arg
ACG
[ENA]
¡û
>W1710758308
LIDI01000020
Betaproteobacteria
Methylophilales bacterium BACL14 MAG-120920-bin58 [LIDI]
1707
1783
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK