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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274092 (37 seq.)
>W1711138267
LVCQ01000051
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
16619
16695
+
Asp
GTC
[ENA]
¡û
>C171026517
CP013757
Gammaproteobacteria
Piscirickettsia salmonis AY6492A [CP013757]
333770
333694
-
Asp
GTC
-
¡û
>C171026573
CP013762
Gammaproteobacteria
Piscirickettsia salmonis PM21567A [CP013762]
464298
464222
-
Asp
GTC
-
¡û
>C171026626
CP013768
Gammaproteobacteria
Piscirickettsia salmonis PM23019A [CP013768]
1322670
1322594
-
Asp
GTC
-
¡û
>C171026681
CP013773
Gammaproteobacteria
Piscirickettsia salmonis PM37984A [CP013773]
1319751
1319675
-
Asp
GTC
-
¡û
>C171026740
CP013778
Gammaproteobacteria
Piscirickettsia salmonis PM51819A [CP013778]
1158799
1158723
-
Asp
GTC
-
¡û
>C171026796
CP013781
Gammaproteobacteria
Piscirickettsia salmonis PM49811B [CP013781]
1323511
1323435
-
Asp
GTC
-
¡û
>C171026852
CP013786
Gammaproteobacteria
Piscirickettsia salmonis PM58386B [CP013786]
1323769
1323693
-
Asp
GTC
-
¡û
>C171026905
CP013791
Gammaproteobacteria
Piscirickettsia salmonis AY6297B [CP013791]
1984940
1984864
-
Asp
GTC
-
¡û
>C171026939
CP013796
Gammaproteobacteria
Piscirickettsia salmonis AY6532B [CP013796]
1397074
1397150
+
Asp
GTC
-
¡û
>C171027014
CP013801
Gammaproteobacteria
Piscirickettsia salmonis PM22180B [CP013801]
2537323
2537247
-
Asp
GTC
-
¡û
>C171027076
CP013806
Gammaproteobacteria
Piscirickettsia salmonis PM31429B [CP013806]
1323575
1323499
-
Asp
GTC
-
¡û
>C171027129
CP013811
Gammaproteobacteria
Piscirickettsia salmonis AY3864B [CP013811]
1984945
1984869
-
Asp
GTC
-
¡û
>C171027185
CP013816
Gammaproteobacteria
Piscirickettsia salmonis AY3800B [CP013816]
1984944
1984868
-
Asp
GTC
-
¡û
>C171027238
CP013821
Gammaproteobacteria
Piscirickettsia salmonis PM25344B [CP013821]
2538383
2538307
-
Asp
GTC
-
¡û
>W131037601
AMFF01000190
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMFF]
11914
11990
+
Asp
GTC
[ENA]
¡û
>W131038456
AMGC01000241
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMGC]
1545
1621
+
Asp
GTC
[ENA]
¡û
>W131195154
ASSK01000007
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [ASSK]
12056
12132
+
Asp
GTC
[ENA]
¡û
>W141221213
AZYQ02000146
Gammaproteobacteria
Piscirickettsia salmonis AUSTRAL-005 [AZYQ]
13274
13350
+
Asp
GTC
[ENA]
¡û
>WENV170307129
CESJ01122756
[CESJ] marine metagenome genome assembly TARA_084_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
365
291
-
Asp
GTC
[ENA]
¢þ
>WENV170407439
CEUH01137143
[CEUH] marine metagenome genome assembly TARA_137_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
26391
26315
-
Asp
GTC
[ENA]
¢þ
>WENV170878339
MDTC01074267
[MDTC] marine metagenome; seawater
8139
8215
+
Asp
GTC
[ENA]
¢þ
>C191116634
CP033937
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [CP033937]
2528258
2528334
+
Asp
GTC
-
¡û
>C191116657
CP033937
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [CP033937]
2360594
2360518
-
Asp
GTC
-
¡û
>W1911652728
QBEV01000030
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO2 [QBEV]
10007
10083
+
Asp
GTC
[ENA]
¡û
>W1810054401
PDFD01000197
Gammaproteobacteria
Piscirickettsia salmonis S-GIM [PDFD]
7219
7143
-
Asp
GTC
[ENA]
¡û
>C151086970
CP011849
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [CP011849]
649449
649525
+
Asp
GTC
[Ensembl]
¡û
>C151095324
CP012508
Gammaproteobacteria
Piscirickettsia salmonis PM32597B1 [CP012508]
2537319
2537243
-
Asp
GTC
-
¡û
>W1511336295
JRAD02000017
Gammaproteobacteria
Piscirickettsia salmonis B1-32597 [JRAD]
13270
13346
+
Asp
GTC
[ENA]
¡û
>W1511337026
JRAV02000018
Gammaproteobacteria
Piscirickettsia salmonis A1-15972 [JRAV]
9823
9899
+
Asp
GTC
[ENA]
¡û
>W1511346405
JRHD01000026
Gammaproteobacteria
Piscirickettsia salmonis T-GIM [JRHD]
12022
12098
+
Asp
GTC
[ENA]
¡û
>W1511346895
JRHP01000219
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [JRHP]
12186
12262
+
Asp
GTC
[ENA]
¡û
>W1511657159
LELB01000125
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [LELB]
1875
1951
+
Asp
GTC
[ENA]
¡û
>C161042054
CP012413
Gammaproteobacteria
Piscirickettsia salmonis PM15972A1 [CP012413]
2264917
2264841
-
Asp
GTC
[Ensembl]
¡û
>C161062499
CP013944
Gammaproteobacteria
Piscirickettsia salmonis PSCGR01 [CP013944]
2510024
2509948
-
Asp
GTC
-
¡û
>C161063166
CP013975
Gammaproteobacteria
Piscirickettsia salmonis CGR02 [CP013975]
2555271
2555195
-
Asp
GTC
-
¡û
>W1610949353
LVCQ01000051
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
16619
16695
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK