This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274216 (59 seq.)
>W1711094779
LTGG01000058
Betaproteobacteria
Eikenella sp. HMSC071B05 [LTGG]
2968
3044
+
Arg
TCT
[ENA]
¡û
>W1711099437
LTKM01000052
Betaproteobacteria
Eikenella sp. HMSC061C02 [LTKM]
15109
15185
+
Arg
TCT
[ENA]
¡û
>W1711107389
LTST01000013
Betaproteobacteria
Eikenella sp. HMSC073A11 [LTST]
20258
20182
-
Arg
TCT
[ENA]
¡û
>W1711222612
LXSE01000035
Betaproteobacteria
Eikenella corrodens [LXSE]
40561
40637
+
Arg
TCT
[ENA]
¡û
>W1711222644
LXSF01000006
Betaproteobacteria
Eikenella corrodens [LXSF]
71014
71090
+
Arg
TCT
[ENA]
¡û
>W1711222705
LXSG01000039
Betaproteobacteria
Eikenella corrodens [LXSG]
21138
21062
-
Arg
TCT
[ENA]
¡û
>W1711222751
LXSH01000033
Betaproteobacteria
Eikenella corrodens [LXSH]
24556
24480
-
Arg
TCT
[ENA]
¡û
>W1711222781
LXSI01000008
Betaproteobacteria
Eikenella corrodens [LXSI]
14301
14377
+
Arg
TCT
[ENA]
¡û
>W1711222825
LXSJ01000030
Betaproteobacteria
Eikenella corrodens [LXSJ]
3163
3239
+
Arg
TCT
[ENA]
¡û
>W1711222867
LXSK01000007
Betaproteobacteria
Eikenella sp. NML01-A-086 [LXSK]
114878
114802
-
Arg
TCT
[ENA]
¡û
>W1711222893
LXSL01000011
Betaproteobacteria
Eikenella longinqua NML02-A-017 [LXSL]
127726
127650
-
Arg
TCT
[ENA]
¡û
>W1711222943
LXSM01000003
Betaproteobacteria
Eikenella sp. NML03-A-027 [LXSM]
144225
144301
+
Arg
TCT
[ENA]
¡û
>W1711223007
LXSN01000005
Betaproteobacteria
Eikenella sp. NML070372 [LXSN]
76403
76479
+
Arg
TCT
[ENA]
¡û
>W1711223056
LXSO01000011
Betaproteobacteria
Eikenella sp. NML080894 [LXSO]
116084
116008
-
Arg
TCT
[ENA]
¡û
>W1711223095
LXSP01000004
Betaproteobacteria
Eikenella sp. NML120348 [LXSP]
116551
116475
-
Arg
TCT
[ENA]
¡û
>W1711223119
LXSQ01000016
Betaproteobacteria
Eikenella halliae NML130454 [LXSQ]
71675
71599
-
Arg
TCT
[ENA]
¡û
>W1711223154
LXSR01000012
Betaproteobacteria
Eikenella sp. NML96-A-049 [LXSR]
34251
34327
+
Arg
TCT
[ENA]
¡û
>W1711223200
LXSS01000009
Betaproteobacteria
Eikenella sp. NML97-A-109 [LXSS]
114714
114638
-
Arg
TCT
[ENA]
¡û
>W1711223255
LXST01000003
Betaproteobacteria
Eikenella sp. NML99-0057 [LXST]
115651
115727
+
Arg
TCT
[ENA]
¡û
>W1711712090
MTBN01000001
Betaproteobacteria
Neisseria animaloris [MTBN]
58104
58180
+
Arg
TCT
[ENA]
¡û
>W1712084756
NHRS01000001
Betaproteobacteria
Eikenella corrodens [NHRS]
205899
205975
+
Arg
TCT
[ENA]
¡û
>WENV180006716
FLRY01247992
[FLRY] metagenome; saliva
77
1
-
Arg
TCT
[ENA]
¢þ
>W141042666
AMER01000110
Betaproteobacteria
Neisseria sp. oral taxon 020 oral taxon 020 str. F0370 [AMER]
5130
5054
-
Arg
TCT
[ENA]
¡û
>WENV180750683
ODHS01005502
[ODHS] human metagenome; G_DNA_Supragingival plaque
1930
1854
-
Arg
TCT
[ENA]
¢þ
>WENV180778569
ODIM01016061
[ODIM] human metagenome; G_DNA_Supragingival plaque
361
285
-
Arg
TCT
[ENA]
¢þ
>WENV180795851
ODJB01000419
[ODJB] human metagenome; G_DNA_Supragingival plaque
8970
9046
+
Arg
TCT
[ENA]
¢þ
>WENV180832524
ODKC01002066
[ODKC] human metagenome; G_DNA_Supragingival plaque
11091
11015
-
Arg
TCT
[ENA]
¢þ
>WENV180836358
ODKE01135818
[ODKE] human metagenome; G_DNA_Supragingival plaque
72
148
+
Arg
TCT
[ENA]
¢þ
>WENV180875396
ODLQ01132225
[ODLQ] human metagenome; G_DNA_Tongue dorsum
193
117
-
Arg
TCT
[ENA]
¢þ
>WENV181009751
ODWE01187706
[ODWE] human metagenome; G_DNA_Supragingival plaque
94
170
+
Arg
TCT
[ENA]
¢þ
>WENV181077896
OEAP01218807
[OEAP] human metagenome; G_DNA_Supragingival plaque
133
57
-
Arg
TCT
[ENA]
¢þ
>W141202106
AZGQ01000004
Betaproteobacteria
Eikenella corrodens CC92I [AZGQ]
189130
189206
+
Arg
TCT
[ENA]
¡û
>C181067643
CP022527
Betaproteobacteria
Neisseria sp. KEM232 [CP022527]
856633
856557
-
Arg
TCT
-
¡û
>C181226766
LT906482
Betaproteobacteria
Eikenella corrodens NCTC10596 [LT906482]
397712
397788
+
Arg
TCT
-
¡û
>C191128742
CP034670
Betaproteobacteria
Eikenella corrodens KCOM 3110 [CP034670]
2014694
2014618
-
Arg
TCT
-
¡û
>C191211120
LR134440
Betaproteobacteria
Neisseria animaloris NCTC12228 [LR134440]
1243232
1243156
-
Arg
TCT
-
¡û
>C191213623
LR134516
Betaproteobacteria
Neisseria animaloris NCTC12227 [LR134516]
103744
103820
+
Arg
TCT
-
¡û
>W09119690
ACEA01000012
Betaproteobacteria
Eikenella corrodens ATCC 23834 [ACEA]
40569
40645
+
Arg
TCT
[ENA]
¡û
>W1810228440
POYC01000002
Betaproteobacteria
Neisseria animaloris C2015003240 [POYC]
295328
295404
+
Arg
TCT
[ENA]
¡û
>W1511439620
JUOC01000006
Betaproteobacteria
Neisseria bacilliformis 914_NLAC [JUOC]
19307
19231
-
Arg
TCT
[ENA]
¡û
>W1511453334
JVFA01000092
Betaproteobacteria
Eikenella corrodens 491_NMEN [JVFA]
45075
44999
-
Arg
TCT
[ENA]
¡û
>W1511464693
JVQC01000062
Betaproteobacteria
Neisseria bacilliformis 203_NMEN [JVQC]
29259
29335
+
Arg
TCT
[ENA]
¡û
>W11156185
AFAY01000003
Betaproteobacteria
Neisseria bacilliformis ATCC BAA-1200 [AFAY]
77605
77529
-
Arg
TCT
[ENA]
¡û
>W1611007025
LXSE01000035
Betaproteobacteria
Eikenella corrodens [LXSE]
40561
40637
+
Arg
TCT
[ENA]
¡û
>W1611007057
LXSF01000006
Betaproteobacteria
Eikenella corrodens [LXSF]
71014
71090
+
Arg
TCT
[ENA]
¡û
>W1611007118
LXSG01000039
Betaproteobacteria
Eikenella corrodens [LXSG]
21138
21062
-
Arg
TCT
[ENA]
¡û
>W1611007164
LXSH01000033
Betaproteobacteria
Eikenella corrodens [LXSH]
24556
24480
-
Arg
TCT
[ENA]
¡û
>W1611007194
LXSI01000008
Betaproteobacteria
Eikenella corrodens [LXSI]
14301
14377
+
Arg
TCT
[ENA]
¡û
>W1611007238
LXSJ01000030
Betaproteobacteria
Eikenella corrodens [LXSJ]
3163
3239
+
Arg
TCT
[ENA]
¡û
>W1611007280
LXSK01000007
Betaproteobacteria
Eikenella sp. NML01-A-086 [LXSK]
114878
114802
-
Arg
TCT
[ENA]
¡û
>W1611007306
LXSL01000011
Betaproteobacteria
Eikenella longinqua NML02-A-017 [LXSL]
127726
127650
-
Arg
TCT
[ENA]
¡û
>W1611007356
LXSM01000003
Betaproteobacteria
Eikenella sp. NML03-A-027 [LXSM]
144225
144301
+
Arg
TCT
[ENA]
¡û
>W1611007420
LXSN01000005
Betaproteobacteria
Eikenella sp. NML070372 [LXSN]
76403
76479
+
Arg
TCT
[ENA]
¡û
>W1611007469
LXSO01000011
Betaproteobacteria
Eikenella sp. NML080894 [LXSO]
116084
116008
-
Arg
TCT
[ENA]
¡û
>W1611007508
LXSP01000004
Betaproteobacteria
Eikenella sp. NML120348 [LXSP]
116551
116475
-
Arg
TCT
[ENA]
¡û
>W1611007532
LXSQ01000016
Betaproteobacteria
Eikenella halliae NML130454 [LXSQ]
71675
71599
-
Arg
TCT
[ENA]
¡û
>W1611007567
LXSR01000012
Betaproteobacteria
Eikenella sp. NML96-A-049 [LXSR]
34251
34327
+
Arg
TCT
[ENA]
¡û
>W1611007613
LXSS01000009
Betaproteobacteria
Eikenella sp. NML97-A-109 [LXSS]
114714
114638
-
Arg
TCT
[ENA]
¡û
>W1611007668
LXST01000003
Betaproteobacteria
Eikenella sp. NML99-0057 [LXST]
115651
115727
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK