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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274236 (55 seq.)
>W1710864393
LMFV01000034
Alphaproteobacteria
Mesorhizobium sp. Root552 [LMFV]
141806
141882
+
Arg
TCT
[ENA]
¡û
>W1710989573
LPWA01000099
Alphaproteobacteria
Mesorhizobium loti [LPWA]
6959
6883
-
Arg
TCT
[ENA]
¡û
>W1711257255
LYTM01000031
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
15881
15957
+
Arg
TCT
[ENA]
¡û
>W1711257373
LYTP01000033
Alphaproteobacteria
Mesorhizobium sp. AA23 [LYTP]
192609
192685
+
Arg
TCT
[ENA]
¡û
>W1711353190
MDDT01000057
Alphaproteobacteria
Mesorhizobium sp. LCM 4576 [MDDT]
687886
687962
+
Arg
TCT
[ENA]
¡û
>W1711353240
MDDU01000054
Alphaproteobacteria
Mesorhizobium sp. LCM 4577 [MDDU]
34660
34584
-
Arg
TCT
[ENA]
¡û
>W1711354752
MDFL01000126
Alphaproteobacteria
Mesorhizobium sp. ORS 3428 ORS3428 [MDFL]
5137
5061
-
Arg
TCT
[ENA]
¡û
>W1711501771
MKRZ01000096
Alphaproteobacteria
Mesorhizobium sp. 61-13 [MKRZ]
9128
9052
-
Arg
TCT
[ENA]
¡û
>W131219397
ATYO01000003
Alphaproteobacteria
Mesorhizobium sp. WSM3224 [ATYO]
118635
118711
+
Arg
TCT
[ENA]
¡û
>WENV180020383
FTCZ01002510
[FTCZ] metagenome; soil
884
808
-
Arg
TCT
[ENA]
¢þ
>WENV181168138
OEIU01176721
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
66
142
+
Arg
TCT
[ENA]
¢þ
>WENV181308248
OFIS01001537
[OFIS] sludge metagenome; sludge
4735
4811
+
Arg
TCT
[ENA]
¢þ
>WENV181311457
OFJB01002294
[OFJB] sludge metagenome; sludge
5927
6003
+
Arg
TCT
[ENA]
¢þ
>WENV181401907
OFTX01019135
[OFTX] sludge metagenome; sludge
512
588
+
Arg
TCT
[ENA]
¢þ
>WENV181402347
OFTY01000739
[OFTY] sludge metagenome; sludge
717
641
-
Arg
TCT
[ENA]
¢þ
>WENV181416662
OGCL01123043
[OGCL] hot springs metagenome; Hot spring water
250
174
-
Arg
TCT
[ENA]
¢þ
>W141242815
CAIU01000007
Alphaproteobacteria
Pseudaminobacter salicylatoxidans KCT001 [CAIU]
162052
162128
+
Arg
TCT
[ENA]
¡û
>W141266687
CCMY01000089
Alphaproteobacteria
Mesorhizobium sp. ORS 3324 ORS3324 [CCMY]
7721
7797
+
Arg
TCT
[ENA]
¡û
>W141266725
CCMZ01000033
Alphaproteobacteria
Mesorhizobium plurifarium [CCMZ]
143039
143115
+
Arg
TCT
[ENA]
¡û
>W141266783
CCNA01000034
Alphaproteobacteria
Mesorhizobium sp. SOD10 [CCNA]
601088
601012
-
Arg
TCT
[ENA]
¡û
>W141266825
CCNB01000026
Alphaproteobacteria
Mesorhizobium plurifarium [CCNB]
23746
23822
+
Arg
TCT
[ENA]
¡û
>W141266846
CCNC01000033
Alphaproteobacteria
Mesorhizobium sp. ORS 3359 ORS3359 [CCNC]
57489
57565
+
Arg
TCT
[ENA]
¡û
>W141266928
CCNE01000065
Alphaproteobacteria
Mesorhizobium plurifarium [CCNE]
24478
24554
+
Arg
TCT
[ENA]
¡û
>W141279634
JAGL01000009
Alphaproteobacteria
Aminobacter sp. J41 [JAGL]
133588
133664
+
Arg
TCT
[ENA]
¡û
>WENV183746590
POYE01029823
[POYE] biofilm metagenome; steel pipe from biofilm reactor
490
566
+
Arg
TCT
[ENA]
¢þ
>WENV170010858
APMI01032010
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2160
2236
+
Arg
TCT
[ENA]
¢þ
>WENV170561399
CZCA01008080
[CZCA] anaerobic digester metagenome; anaerobic digester
476
400
-
Arg
TCT
[ENA]
¢þ
>C191125562
CP034444
Alphaproteobacteria
Mesorhizobium sp. M1D.F.Ca.ET.043.01.1.1 [CP034444]
885532
885456
-
Arg
TCT
-
¡û
>C191125583
CP034445
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.02.1.1 [CP034445]
5689408
5689484
+
Arg
TCT
-
¡û
>C191125648
CP034446
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.05.1.1 [CP034446]
2772458
2772382
-
Arg
TCT
-
¡û
>C191125690
CP034447
Alphaproteobacteria
Mesorhizobium sp. M1E.F.Ca.ET.045.02.1.1 [CP034447]
6388585
6388509
-
Arg
TCT
-
¡û
>C191125747
CP034448
Alphaproteobacteria
Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 [CP034448]
5972812
5972736
-
Arg
TCT
-
¡û
>C191125814
CP034449
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1 [CP034449]
135696
135620
-
Arg
TCT
-
¡û
>C191125858
CP034451
Alphaproteobacteria
Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 [CP034451]
1433572
1433496
-
Arg
TCT
-
¡û
>W1911242451
NSFT01000004
Alphaproteobacteria
Mesorhizobium sp. WSM4313 [NSFT]
430815
430891
+
Arg
TCT
[ENA]
¡û
>W1911242720
NSFY01000027
Alphaproteobacteria
Mesorhizobium sp. WSM3882 [NSFY]
16280
16204
-
Arg
TCT
[ENA]
¡û
>W1911242756
NSFZ01000009
Alphaproteobacteria
Mesorhizobium sp. WSM3879 [NSFZ]
205180
205104
-
Arg
TCT
[ENA]
¡û
>W1911242811
NSGA01000018
Alphaproteobacteria
Mesorhizobium sp. WSM3876 [NSGA]
98344
98420
+
Arg
TCT
[ENA]
¡û
>W1911242849
NSGB01000014
Alphaproteobacteria
Mesorhizobium sp. WSM3868 [NSGB]
17394
17318
-
Arg
TCT
[ENA]
¡û
>W1911242910
NSGC01000030
Alphaproteobacteria
Mesorhizobium sp. WSM3866 [NSGC]
9298
9222
-
Arg
TCT
[ENA]
¡û
>W1911242955
NSGD01000031
Alphaproteobacteria
Mesorhizobium sp. WSM3864 [NSGD]
12747
12823
+
Arg
TCT
[ENA]
¡û
>W1911243011
NSGE01000018
Alphaproteobacteria
Mesorhizobium sp. WSM3862 [NSGE]
14747
14823
+
Arg
TCT
[ENA]
¡û
>W1911243061
NSGF01000039
Alphaproteobacteria
Mesorhizobium sp. WSM3860 [NSGF]
10445
10369
-
Arg
TCT
[ENA]
¡û
>W1911243073
NSGG01000002
Alphaproteobacteria
Mesorhizobium sp. WSM3859 [NSGG]
137942
137866
-
Arg
TCT
[ENA]
¡û
>W1911695517
QMBQ01000001
Alphaproteobacteria
Mesorhizobium atlanticum CNPSo 3140 [QMBQ]
206566
206490
-
Arg
TCT
[ENA]
¡û
>W1810390422
PXYL01000004
Alphaproteobacteria
Mesorhizobium soli JCM 19897 [PXYL]
9226
9302
+
Arg
TCT
[ENA]
¡û
>W1810595904
QGGG01000003
Alphaproteobacteria
Pseudaminobacter salicylatoxidans DSM 6986 [QGGG]
31074
31150
+
Arg
TCT
[ENA]
¡û
>W1810699024
QMBP01000027
Alphaproteobacteria
Mesorhizobium hawassense AC99b [QMBP]
48331
48407
+
Arg
TCT
[ENA]
¡û
>W1511588803
LBCQ01000001
Alphaproteobacteria
Aquamicrobium sp. LC103 LC103 [LBCQ]
504741
504665
-
Arg
TCT
[ENA]
¡û
>W1610726739
LMFV01000034
Alphaproteobacteria
Mesorhizobium sp. Root552 [LMFV]
141806
141882
+
Arg
TCT
[ENA]
¡û
>W1610844449
LPWA01000099
Alphaproteobacteria
Mesorhizobium loti [LPWA]
6959
6883
-
Arg
TCT
[ENA]
¡û
>W1611020231
LYTM01000031
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
15881
15957
+
Arg
TCT
[ENA]
¡û
>W1611020395
LYTP01000033
Alphaproteobacteria
Mesorhizobium sp. AA23 [LYTP]
192609
192685
+
Arg
TCT
[ENA]
¡û
>W1710567101
FOSL01000017
Alphaproteobacteria
Mesorhizobium albiziae [FOSL]
22510
22434
-
Arg
TCT
[ENA]
¡û
>W1710571246
FOVT01000006
Alphaproteobacteria
Mesorhizobium sp. NFR06 [FOVT]
238682
238606
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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