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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274437 (24 seq.)
>A171000786
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
2523538
2523463
-
Thr
TGT
-
¡û
>A171002646
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
813533
813460
-
Thr
TGT
-
¡û
>A171003979
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
827367
827294
-
Thr
TGT
-
¡û
>A171005815
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
2418395
2418322
-
Thr
TGT
-
¡û
>At0770
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
94345
94272
-
Thr
TGT
[Ensembl]
¡û
>WENV170660867
JXWU01049732
[JXWU] soil metagenome; rice field; organic control Plot
219
292
+
Thr
TGT
[ENA]
¢þ
>W1910175088
BIXZ01000001
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
786556
786630
+
Thr
TGT
[ENA]
¡û
>W1910228392
FNOF01000006
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
54902
54828
-
Thr
TGT
[ENA]
¡û
>W1910583035
JXAO01000001
Euryarchaeota
Haloarcula argentinensis H5-DGR [JXAO]
212602
212675
+
Thr
TGT
[ENA]
¡û
>W1910617606
LIUF01000004
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
251248
251321
+
Thr
TGT
[ENA]
¡û
>W1911709468
QPLN01000002
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
564307
564234
-
Thr
TGT
[ENA]
¡û
>W1911709599
QPLQ01000002
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
319742
319815
+
Thr
TGT
[ENA]
¡û
>W1911770003
QXIK01000001
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
303885
303958
+
Thr
TGT
[ENA]
¡û
>W1610000794
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
1202285
1202361
+
Thr
TGT
[ENA]
¡û
>W1610014139
AOLQ01000038
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
187538
187614
+
Thr
TGT
[ENA]
¡û
>W1610014194
AOLR01000021
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
38138
38211
+
Thr
TGT
[ENA]
¡û
>W1610014215
AOLS01000032
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
129424
129351
-
Thr
TGT
[ENA]
¡û
>W1610014276
AOLW01000019
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
58550
58623
+
Thr
TGT
[ENA]
¡û
>W1610014316
AOLX01000015
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
319500
319573
+
Thr
TGT
[ENA]
¡û
>W1610014393
AOLY01000037
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
459500
459573
+
Thr
TGT
[ENA]
¡û
>W1610018981
AQZY01000010
Euryarchaeota
Halomicrobium katesii DSM 19301 [AQZY]
900295
900371
+
Thr
TGT
[ENA]
¡û
>W1610061931
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
90810
90734
-
Thr
TGT
[ENA]
¡û
>W1610061952
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
2845283
2845356
+
Thr
TGT
[ENA]
¡û
>W1610881034
LRHL01000034
Euryarchaeota
Haloarcula sp. K1 [LRHL]
242152
242076
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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