This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274439 (31 seq.)
>A171000736
CP001687
Euryarchaeota
Halorhabdus utahensis DSM 12940 [CP001687]
2309191
2309268
+
Ile
GAT
-
¡û
>A171002611
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
522275
522350
+
Ile
GAT
-
¡û
>A171003944
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
534676
534751
+
Ile
GAT
-
¡û
>A171005801
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
2127391
2127466
+
Ile
GAT
-
¡û
>WENV180318276
OBKM01000262
[OBKM] metagenome; water
7965
7890
-
Ile
GAT
[ENA]
¢þ
>WENV180318448
OBKM01000940
[OBKM] metagenome; water
75
2
-
Ile
GAT
[ENA]
¢þ
>WENV180318517
OBKM01001530
[OBKM] metagenome; water
5231
5306
+
Ile
GAT
[ENA]
¢þ
>At0768
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
2931489
2931562
+
Ile
GAT
[Ensembl]
¡û
>WENV170681233
LFFM01000239
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
95
22
-
Ile
GAT
[ENA]
¢þ
>WENV170702904
LKMJ01004770
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5711
5785
+
Ile
GAT
[ENA]
¢þ
>W1910175093
BIXZ01000001
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
1073451
1073377
-
Ile
GAT
[ENA]
¡û
>W1910228347
FNOF01000001
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
292715
292789
+
Ile
GAT
[ENA]
¡û
>W1910230803
FOZK01000002
Euryarchaeota
Halomicrobium zhouii CGMCC 1.10457 [FOZK]
822533
822460
-
Ile
GAT
[ENA]
¡û
>W1910583056
JXAO01000021
Euryarchaeota
Haloarcula argentinensis H5-DGR [JXAO]
30381
30454
+
Ile
GAT
[ENA]
¡û
>W1910617584
LIUF01000001
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
300105
300031
-
Ile
GAT
[ENA]
¡û
>W1911493135
OBEJ01000001
Euryarchaeota
Natronoarchaeum philippinense DSM 27208 [OBEJ]
1066765
1066838
+
Ile
GAT
[ENA]
¡û
>W1911696825
QNGA01000003
Euryarchaeota
halophilic archaeon H22 [QNGA]
15608
15535
-
Ile
GAT
[ENA]
¡û
>W1911709461
QPLN01000002
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
281187
281261
+
Ile
GAT
[ENA]
¡û
>W1911709603
QPLQ01000002
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
608890
608815
-
Ile
GAT
[ENA]
¡û
>W1911709882
QPMJ01000002
Euryarchaeota
Halorussus rarus TBN4 [QPMJ]
468526
468451
-
Ile
GAT
[ENA]
¡û
>W1911770005
QXIK01000001
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
584821
584747
-
Ile
GAT
[ENA]
¡û
>W1610000846
ABTZ01000001
Euryarchaeota
Halorhabdus utahensis DSM 12940 [ABTZ]
3041988
3042065
+
Ile
GAT
[ENA]
¡û
>W1610014156
AOLQ01000069
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
292621
292697
+
Ile
GAT
[ENA]
¡û
>W1610014196
AOLR01000021
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
330170
330095
-
Ile
GAT
[ENA]
¡û
>W1610014219
AOLS01000060
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
165017
164942
-
Ile
GAT
[ENA]
¡û
>W1610014281
AOLW01000023
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
56378
56302
-
Ile
GAT
[ENA]
¡û
>W1610014321
AOLX01000017
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
195832
195757
-
Ile
GAT
[ENA]
¡û
>W1610014401
AOLY01000039
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
134336
134263
-
Ile
GAT
[ENA]
¡û
>W1610061909
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
2845743
2845818
+
Ile
GAT
[ENA]
¡û
>W1610061973
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
22977
22903
-
Ile
GAT
[ENA]
¡û
>W1610881021
LRHL01000017
Euryarchaeota
Haloarcula sp. K1 [LRHL]
50471
50396
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK