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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274601 (53 seq.)
>W1711065122
LSBN01000118
Bacillota
Halanaerobium sp. T82-1 [LSBN]
2787
2862
+
Val
TAC
[ENA]
¡û
>W131250012
CAUI01000004
Bacillota
Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 [CAUI]
1329
1404
+
Val
TAC
[ENA]
¡û
>W131250032
CAUI01000015
Bacillota
Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 [CAUI]
283686
283611
-
Val
TAC
[ENA]
¡û
>WENV181231621
OFEK01043341
[OFEK] activated sludge metagenome; Anaerobic digester
811
736
-
Val
TAC
[ENA]
¢þ
>W141220861
AZYG01000037
Bacillota
Halonatronum saccharophilum DSM 13868 [AZYG]
8010
7935
-
Val
TAC
[ENA]
¡û
>W141220872
AZYG01000037
Bacillota
Halonatronum saccharophilum DSM 13868 [AZYG]
6373
6298
-
Val
TAC
[ENA]
¡û
>WENV183799147
PVBE010479904
[PVBE] marine metagenome; water
570
642
+
Val
TAC
[ENA]
¢þ
>WENV170668435
LADL02003835
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
6427
6354
-
Val
TAC
[ENA]
¢þ
>WENV170668443
LADL02003845
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
357
282
-
Val
TAC
[ENA]
¢þ
>WENV170675142
LCWZ01008378
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
101
26
-
Val
TAC
[ENA]
¢þ
>WENV170675269
LCWZ01023672
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
447
372
-
Val
TAC
[ENA]
¢þ
>WENV170675333
LCWZ01040933
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
86
11
-
Val
TAC
[ENA]
¢þ
>WENV170675344
LCWZ01043369
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
73
1
-
Val
TAC
[ENA]
¢þ
>WENV170675386
LCWZ01058163
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
53
128
+
Val
TAC
[ENA]
¢þ
>C191094423
CP032760
Bacillota
Halocella sp. SP3-1 [CP032760]
1614920
1614995
+
Val
TAC
-
¡û
>C191094461
CP032760
Bacillota
Halocella sp. SP3-1 [CP032760]
99947
99872
-
Val
TAC
-
¡û
>W1810486224
QAXS01000031
Bacillota
Halanaerobium saccharolyticum WC1 [QAXS]
35032
34957
-
Val
TAC
[ENA]
¡û
>W1810486230
QAXS01000037
Bacillota
Halanaerobium saccharolyticum WC1 [QAXS]
8503
8578
+
Val
TAC
[ENA]
¡û
>W1810503742
QBKJ01000001
Bacillota
Halanaerobium congolense WG5_pb [QBKJ]
1727788
1727863
+
Val
TAC
[ENA]
¡û
>W1810503775
QBKJ01000001
Bacillota
Halanaerobium congolense WG5_pb [QBKJ]
274278
274203
-
Val
TAC
[ENA]
¡û
>W1810628445
QICM01000030
Bacillota
Halanaerobium congolense MSL28 [QICM]
32229
32154
-
Val
TAC
[ENA]
¡û
>W1810628451
QICM01000031
Bacillota
Halanaerobium congolense MSL28 [QICM]
1284
1359
+
Val
TAC
[ENA]
¡û
>W1810694651
QLME01000020
Bacillota
Halanaerobium saccharolyticum MSL 17.2 [QLME]
4214
4289
+
Val
TAC
[ENA]
¡û
>W1810694670
QLME01000030
Bacillota
Halanaerobium saccharolyticum MSL 17.2 [QLME]
33457
33382
-
Val
TAC
[ENA]
¡û
>W1810759154
QPJF01000004
Bacillota
Halanaerobium sp. ST460_2HS_T2 [QPJF]
132985
132910
-
Val
TAC
[ENA]
¡û
>W1810759188
QPJF01000026
Bacillota
Halanaerobium sp. ST460_2HS_T2 [QPJF]
33311
33236
-
Val
TAC
[ENA]
¡û
>C11110036
CP002304
Bacillota
Halanaerobium hydrogeniformans sapolanicus [CP002304]
2188545
2188470
-
Val
TAC
[Ensembl]
¡û
>C11110053
CP002304
Bacillota
Halanaerobium hydrogeniformans sapolanicus [CP002304]
1646986
1646911
-
Val
TAC
[Ensembl]
¡û
>C11110570
CP002175
Bacillota
Halanaerobium praevalens DSM 2228 [CP002175]
907976
908051
+
Val
TAC
[Ensembl]
¡û
>C11110595
CP002175
Bacillota
Halanaerobium praevalens DSM 2228 [CP002175]
1910459
1910384
-
Val
TAC
[Ensembl]
¡û
>W1610905911
LSBN01000118
Bacillota
Halanaerobium sp. T82-1 [LSBN]
2787
2862
+
Val
TAC
[ENA]
¡û
>W1710511549
FMYT01000001
Bacillota
Halanaerobium congolense [FMYT]
142854
142929
+
Val
TAC
[ENA]
¡û
>W1710511587
FMYT01000029
Bacillota
Halanaerobium congolense [FMYT]
1040
1115
+
Val
TAC
[ENA]
¡û
>W1710514958
FNBJ01000001
Bacillota
Halanaerobium congolense [FNBJ]
14551
14626
+
Val
TAC
[ENA]
¡û
>W1710514992
FNBJ01000003
Bacillota
Halanaerobium congolense [FNBJ]
32514
32439
-
Val
TAC
[ENA]
¡û
>W1710517311
FNDF01000010
Bacillota
Halanaerobium congolense [FNDF]
3126
3051
-
Val
TAC
[ENA]
¡û
>W1710517333
FNDF01000047
Bacillota
Halanaerobium congolense [FNDF]
1036
1111
+
Val
TAC
[ENA]
¡û
>W1710521007
FNGB01000001
Bacillota
Halanaerobium congolense [FNGB]
79423
79348
-
Val
TAC
[ENA]
¡û
>W1710521046
FNGB01000035
Bacillota
Halanaerobium congolense [FNGB]
888
963
+
Val
TAC
[ENA]
¡û
>W1710522699
FNHK01000002
Bacillota
Halanaerobium congolense [FNHK]
99898
99973
+
Val
TAC
[ENA]
¡û
>W1710522738
FNHK01000039
Bacillota
Halanaerobium congolense [FNHK]
1054
1129
+
Val
TAC
[ENA]
¡û
>W1710553015
FOHG01000001
Bacillota
Halanaerobium congolense [FOHG]
264554
264479
-
Val
TAC
[ENA]
¡û
>W1710553045
FOHG01000003
Bacillota
Halanaerobium congolense [FOHG]
32280
32205
-
Val
TAC
[ENA]
¡û
>W1710553293
FOHM01000004
Bacillota
Halanaerobium congolense [FOHM]
48086
48011
-
Val
TAC
[ENA]
¡û
>W1710553329
FOHM01000036
Bacillota
Halanaerobium congolense [FOHM]
20227
20152
-
Val
TAC
[ENA]
¡û
>W1710568115
FOTI01000001
Bacillota
Halanaerobium salsuginis [FOTI]
65904
65979
+
Val
TAC
[ENA]
¡û
>W1710568151
FOTI01000033
Bacillota
Halanaerobium salsuginis [FOTI]
31979
31904
-
Val
TAC
[ENA]
¡û
>W1710572785
FOWY01000001
Bacillota
Halanaerobium congolense [FOWY]
14529
14604
+
Val
TAC
[ENA]
¡û
>W1710572819
FOWY01000004
Bacillota
Halanaerobium congolense [FOWY]
32527
32452
-
Val
TAC
[ENA]
¡û
>W1710592901
FRCV01000001
Bacillota
Halanaerobium congolense [FRCV]
248874
248799
-
Val
TAC
[ENA]
¡û
>W1710592938
FRCV01000028
Bacillota
Halanaerobium congolense [FRCV]
1052
1127
+
Val
TAC
[ENA]
¡û
>W1710597281
FTNC01000034
Bacillota
Halanaerobium kushneri [FTNC]
17547
17472
-
Val
TAC
[ENA]
¡û
>W1710597294
FTNC01000036
Bacillota
Halanaerobium kushneri [FTNC]
18784
18709
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK