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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274638 (42 seq.)
>A171000108
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
1576658
1576733
+
Ala
TGC
-
¡û
>A171000110
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
1689651
1689726
+
Ala
TGC
-
¡û
>A171000890
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
321277
321352
+
Ala
TGC
-
¡û
>A171000892
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
435113
435188
+
Ala
TGC
-
¡û
>A171002241
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
814306
814383
+
Ala
TGC
-
¡û
>A171002243
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
875537
875614
+
Ala
TGC
-
¡û
>A171002262
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
1981335
1981258
-
Ala
TGC
-
¡û
>A171003984
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
284939
285013
+
Ala
TGC
-
¡û
>A171004012
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
750350
750276
-
Ala
TGC
-
¡û
>A171007326
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
1735904
1735830
-
Ala
TGC
-
¡û
>A171007330
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
1499748
1499674
-
Ala
TGC
-
¡û
>A171007375
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
1012945
1012871
-
Ala
TGC
-
¡û
>A171007379
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
701079
701005
-
Ala
TGC
-
¡û
>A171007409
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
2151061
2150987
-
Ala
TGC
-
¡û
>A171007413
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
1839668
1839594
-
Ala
TGC
-
¡û
>A171007656
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
798357
798434
+
Ala
TGC
-
¡û
>A171007658
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
946376
946453
+
Ala
TGC
-
¡û
>A171007677
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
1817786
1817709
-
Ala
TGC
-
¡û
>A171007693
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
273694
273769
+
Ala
TGC
-
¡û
>A171007695
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
384554
384629
+
Ala
TGC
-
¡û
>WENV181231362
OFEK01021900
[OFEK] activated sludge metagenome; Anaerobic digester
764
687
-
Ala
TGC
[ENA]
¢þ
>WENV170018431
BARW01016675
[BARW] marine sediment metagenome; marine subsurface sediment at 107.0 meters below seafloor (mbsf), off the Shimokita Peninsula
472
397
-
Ala
TGC
[ENA]
¢þ
>At1671
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
1603795
1603868
+
Ala
TGC
[Ensembl]
¡û
>At1673
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
1720372
1720445
+
Ala
TGC
[Ensembl]
¡û
>WENV170651422
JRYF01013992
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
299
222
-
Ala
TGC
[ENA]
¢þ
>WENV170668680
LAHQ01013888
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
253
330
+
Ala
TGC
[ENA]
¢þ
>WENV170670960
LAHU01006428
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
97
174
+
Ala
TGC
[ENA]
¢þ
>WENV170675696
LDZQ01000276
[LDZQ] terrestrial metagenome; oil reservoir sample I2
168
243
+
Ala
TGC
[ENA]
¢þ
>WENV170676541
LDZS01001060
[LDZS] terrestrial metagenome; oil reservoir sample K3
172
247
+
Ala
TGC
[ENA]
¢þ
>WENV170676558
LDZS01001556
[LDZS] terrestrial metagenome; oil reservoir sample K3
1180
1105
-
Ala
TGC
[ENA]
¢þ
>WENV170677067
LDZT01001484
[LDZT] terrestrial metagenome; oil reservoir sample SB1
2439
2362
-
Ala
TGC
[ENA]
¢þ
>WENV170677093
LDZT01002066
[LDZT] terrestrial metagenome; oil reservoir sample SB1
2383
2309
-
Ala
TGC
[ENA]
¢þ
>WENV170678577
LDZU01002606
[LDZU] terrestrial metagenome; oil reservoir sample SB2
52
130
+
Ala
TGC
[ENA]
¢þ
>WENV170690150
LFRM01327109
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3238
3163
-
Ala
TGC
[ENA]
¢þ
>WENV170977714
MTKZ01029854
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
5937
5860
-
Ala
TGC
[ENA]
¢þ
>W1911722813
QREL01000005
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
1700
1775
+
Ala
TGC
[ENA]
¡û
>W1610006246
AMGN01000086
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
152
77
-
Ala
TGC
[ENA]
¡û
>W1610006252
AMGN01000096
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
147
72
-
Ala
TGC
[ENA]
¡û
>W1610011039
AMPO01000024
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
102
177
+
Ala
TGC
[ENA]
¡û
>W1610011040
AMPO01000028
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
88
163
+
Ala
TGC
[ENA]
¡û
>W1610049171
BBES01000049
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
3316
3242
-
Ala
TGC
[ENA]
¡û
>W1610990744
LWMV01000208
Euryarchaeota
Methanobrevibacter curvatus DSM 11111 [LWMV]
4164
4090
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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