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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274664 (21 seq.)
>W131238493
BAHV02000010
Bacillota
Clostridiales bacterium VE202-08 [BAHV]
78317
78241
-
Ile
GAT
[ENA]
¡û
>W131238503
BAHV02000014
Bacillota
Clostridiales bacterium VE202-08 [BAHV]
111753
111677
-
Ile
GAT
[ENA]
¡û
>WENV180296893
OBJA01004321
[OBJA] soil metagenome; sediment, water from around vicinity
3651
3575
-
Ile
GAT
[ENA]
¢þ
>WENV181415560
OGCL01014644
[OGCL] hot springs metagenome; Hot spring water
1642
1566
-
Ile
GAT
[ENA]
¢þ
>WENV181415562
OGCL01014781
[OGCL] hot springs metagenome; Hot spring water
848
924
+
Ile
GAT
[ENA]
¢þ
>WENV181489007
OGFR01004390
[OGFR] metagenome; Human gut stool
1766
1842
+
Ile
GAT
[ENA]
¢þ
>WENV181489638
OGFU01004924
[OGFU] metagenome; Human gut stool
72
148
+
Ile
GAT
[ENA]
¢þ
>WENV181994117
OHAS01011585
[OHAS] human gut metagenome; faeces
3754
3830
+
Ile
GAT
[ENA]
¢þ
>W141239352
CAEN01000001
Bacillota
Dielma fastidiosa JC13 [CAEN]
98590
98514
-
Ile
GAT
[ENA]
¡û
>W141239388
CAEN01000046
Bacillota
Dielma fastidiosa JC13 [CAEN]
7396
7472
+
Ile
GAT
[ENA]
¡û
>WENV182518102
OIWP01000179
[OIWP] human gut metagenome; faeces
20442
20366
-
Ile
GAT
[ENA]
¢þ
>WENV182802807
OJUG01058623
[OJUG] human gut metagenome; human gut
544
468
-
Ile
GAT
[ENA]
¢þ
>WENV183155501
OLOS01000417
[OLOS] human gut metagenome; faeces
21934
21858
-
Ile
GAT
[ENA]
¢þ
>W1810659674
QJKH01000001
Bacillota
Dielma fastidiosa JC118 [QJKH]
98695
98619
-
Ile
GAT
[ENA]
¡û
>W1810659686
QJKH01000009
Bacillota
Dielma fastidiosa JC118 [QJKH]
7391
7467
+
Ile
GAT
[ENA]
¡û
>W1810803053
QRQL01000009
Bacillota
Dielma fastidiosa AF31-27BH [QRQL]
117547
117471
-
Ile
GAT
[ENA]
¡û
>W1810803056
QRQL01000010
Bacillota
Dielma fastidiosa AF31-27BH [QRQL]
92222
92146
-
Ile
GAT
[ENA]
¡û
>W1610058539
BBZX01000007
Bacillota
Clostridia bacterium UC5.1-1C12 [BBZX]
114213
114137
-
Ile
GAT
[ENA]
¡û
>W1610058543
BBZX01000008
Bacillota
Clostridia bacterium UC5.1-1C12 [BBZX]
86312
86236
-
Ile
GAT
[ENA]
¡û
>W1710055298
BBZX01000007
Bacillota
Clostridia bacterium UC5.1-1C12 [BBZX]
114213
114137
-
Ile
GAT
[ENA]
¡û
>W1710055302
BBZX01000008
Bacillota
Clostridia bacterium UC5.1-1C12 [BBZX]
86312
86236
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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