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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274678 (20 seq.)
>C171074128
CP018155
Bacteroidota
Tenacibaculum todarodis LPB0136 [CP018155]
2904301
2904377
+
Asp
GTC
-
¡û
>W141276321
JADR01000007
Bacteroidota
Olleya marilimosa CAM030 [JADR]
92964
93040
+
Asp
GTC
[ENA]
¡û
>W141276368
JADS01000027
Bacteroidota
Olleya sp. VCSA23 [JADS]
840
764
-
Asp
GTC
[ENA]
¡û
>W141276404
JADT01000027
Bacteroidota
Olleya sp. VCSM12 [JADT]
835
759
-
Asp
GTC
[ENA]
¡û
>WENV170297973
CESF01030098
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
186875
186799
-
Asp
GTC
[ENA]
¢þ
>WENV170315555
CESO01134085
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
9628
9704
+
Asp
GTC
[ENA]
¢þ
>WENV170928934
MDTG01141993
[MDTG] marine metagenome; seawater
101661
101737
+
Asp
GTC
[ENA]
¢þ
>C181113343
CP025117
Bacteroidota
Olleya sp. Bg11-27 [CP025117]
305615
305541
-
Asp
GTC
-
¡û
>C181202820
CP031612
Bacteroidota
Olleya aquimaris DAU311 [CP031612]
1880784
1880710
-
Asp
GTC
-
¡û
>C191127222
CP034549
Bacteroidota
Nonlabens ponticola MJ115 [CP034549]
175090
175164
+
Asp
GTC
-
¡û
>C191166149
CP039451
Bacteroidota
Psychroserpens sp. NJDZ02 [CP039451]
2007493
2007567
+
Asp
GTC
-
¡û
>W1910693651
MDGO01000009
Bacteroidota
Gaetbulibacter sp. 5U11 [MDGO]
1015674
1015748
+
Asp
GTC
[ENA]
¡û
>W1910785626
MQUC01000003
Bacteroidota
Nonlabens agnitus JCM 17109 [MQUC]
3008600
3008526
-
Asp
GTC
[ENA]
¡û
>W1810157322
PJBW01000001
Bacteroidota
Olleya sp. 1-3 [PJBW]
151793
151719
-
Asp
GTC
[ENA]
¡û
>C161000309
AP014548
Bacteroidota
Nonlabens marinus S1-08 [AP014548]
1317509
1317433
-
Asp
GTC
[Ensembl]
¡û
>W1610060582
BCBW01000044
Bacteroidota
Olleya sp. ITB9 [BCBW]
39763
39839
+
Asp
GTC
[ENA]
¡û
>W1610584198
LBMJ01000001
Bacteroidota
Nonlabens sp. YIK11 [LBMJ]
1052849
1052773
-
Asp
GTC
[ENA]
¡û
>W1710057837
BCBW01000044
Bacteroidota
Olleya sp. ITB9 [BCBW]
39763
39839
+
Asp
GTC
[ENA]
¡û
>W1710565797
FORM01000001
Bacteroidota
Olleya namhaensis [FORM]
156079
156003
-
Asp
GTC
[ENA]
¡û
>W1710703346
LBMJ01000001
Bacteroidota
Nonlabens sp. YIK11 [LBMJ]
1052849
1052773
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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