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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274718 (46 seq.)
>W1710893481
LNEU01000024
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
164563
164639
+
Pro
GGG
[ENA]
¡û
>C171130536
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
916487
916411
-
Pro
GGG
-
¡û
>W131106669
APFF01000021
Betaproteobacteria
Janthinobacterium sp. CG3 [APFF]
93447
93523
+
Pro
GGG
[ENA]
¡û
>C011142
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
1683582
1683506
-
Pro
GGG
[Ensembl]
¡û
>WENV180344505
OBLL01011979
[OBLL] soil metagenome; soil
5
81
+
Pro
GGG
[ENA]
¢þ
>W141093959
AVCC01000015
Betaproteobacteria
Herminiimonas sp. CN [AVCC]
20038
19962
-
Pro
GGG
[ENA]
¡û
>WENV181374917
OFQY01031224
[OFQY] wastewater metagenome; Exp Tend VB 10WW
406
330
-
Pro
GGG
[ENA]
¢þ
>WENV181387660
OFRM01000787
[OFRM] wastewater metagenome; Exp Tend VB 0WW
9778
9854
+
Pro
GGG
[ENA]
¢þ
>WENV181398587
OFSE01000327
[OFSE] wastewater metagenome; Exp Tend VB 50WW
843
767
-
Pro
GGG
[ENA]
¢þ
>WENV183735885
PJUB01008298
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
993
917
-
Pro
GGG
[ENA]
¢þ
>WENV170558553
CXWL01077759
[CXWL] groundwater metagenome; biofilm material
7325
7249
-
Pro
GGG
[ENA]
¢þ
>WENV170559248
CXWL01115849
[CXWL] groundwater metagenome; biofilm material
16165
16241
+
Pro
GGG
[ENA]
¢þ
>WENV170559330
CXWL01119567
[CXWL] groundwater metagenome; biofilm material
9550
9474
-
Pro
GGG
[ENA]
¢þ
>WENV170559417
CXWL01122800
[CXWL] groundwater metagenome; biofilm material
1493
1417
-
Pro
GGG
[ENA]
¢þ
>WENV170559481
CXWL01125142
[CXWL] groundwater metagenome; biofilm material
10563
10487
-
Pro
GGG
[ENA]
¢þ
>WENV170559530
CXWL01127718
[CXWL] groundwater metagenome; biofilm material
5094
5170
+
Pro
GGG
[ENA]
¢þ
>WENV170559608
CXWL01133562
[CXWL] groundwater metagenome; biofilm material
1289
1365
+
Pro
GGG
[ENA]
¢þ
>WENV170659613
JXWR01014389
[JXWR] soil metagenome; rice field; ambient CO2
1763
1687
-
Pro
GGG
[ENA]
¢þ
>WENV170707224
LNAP01015560
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2677
2753
+
Pro
GGG
[ENA]
¢þ
>WENV170711134
LNFM01003707
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2880
2804
-
Pro
GGG
[ENA]
¢þ
>C181071830
CP022736
Betaproteobacteria
Herbaspirillum sp. meg3 [CP022736]
1788280
1788356
+
Pro
GGG
-
¡û
>C181102671
CP024608
Betaproteobacteria
Massilia violaceinigra B2 [CP024608]
3760075
3760151
+
Pro
GGG
-
¡û
>W1910700093
MESE01000094
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36 [MESE]
48106
48030
-
Pro
GGG
[ENA]
¡û
>W1810062356
PDOB01000006
Betaproteobacteria
Massilia psychrophila JCM 30813 [PDOB]
41176
41252
+
Pro
GGG
[ENA]
¡û
>W1810062450
PDOC01000028
Betaproteobacteria
Massilia eurypsychrophila JCM 30074 [PDOC]
15655
15579
-
Pro
GGG
[ENA]
¡û
>W1810068703
PDZP01000002
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
31594
31518
-
Pro
GGG
[ENA]
¡û
>W1810297230
PTLZ01000003
Betaproteobacteria
Herminiimonas fonticola S-94 [PTLZ]
46960
47036
+
Pro
GGG
[ENA]
¡û
>W1810387754
PXWF02000299
Betaproteobacteria
Massilia glaciei B448-2 [PXWF]
84
160
+
Pro
GGG
[ENA]
¡û
>W1810887528
QUQN01000004
Betaproteobacteria
Herbaspirillum sp. 3R-3a1 [QUQN]
206842
206918
+
Pro
GGG
[ENA]
¡û
>C151082360
CP011409
Betaproteobacteria
Herbaspirillum hiltneri N3 [CP011409]
2238225
2238301
+
Pro
GGG
-
¡û
>ENV09001389
ABSR01004430
Freshwater sediment metagenome lwMethylamine_C1
3356
3432
+
Pro
GGG
[ENA]
¡û
>W1511683765
LFLS01000007
Betaproteobacteria
Herbaspirillum autotrophicum IAM 14942 [LFLS]
190039
190115
+
Pro
GGG
[ENA]
¡û
>W1511683818
LFLT01000002
Betaproteobacteria
Herbaspirillum chlorophenolicum CPW301 [LFLT]
159464
159540
+
Pro
GGG
[ENA]
¡û
>W1511683852
LFLU01000001
Betaproteobacteria
Herbaspirillum rhizosphaerae UMS-37 [LFLU]
524509
524585
+
Pro
GGG
[ENA]
¡û
>W121061982
AJHH01000727
Betaproteobacteria
Herbaspirillum lusitanum P6-12 [AJHH]
138
62
-
Pro
GGG
[ENA]
¡û
>W121085184
AKJA01000130
Betaproteobacteria
Herbaspirillum sp. YR522 [AKJA]
16297
16373
+
Pro
GGG
[ENA]
¡û
>W1610070416
BCTG01000001
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
256911
256987
+
Pro
GGG
[ENA]
¡û
>W1610093095
CYSS01000001
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
2254221
2254145
-
Pro
GGG
[ENA]
¡û
>W1610163389
FAOS01000001
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
2254221
2254145
-
Pro
GGG
[ENA]
¡û
>W1610753747
LNEU01000024
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
164563
164639
+
Pro
GGG
[ENA]
¡û
>W1710067789
BCTG01000001
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
256911
256987
+
Pro
GGG
[ENA]
¡û
>W1710096303
CYSS01000001
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
2254221
2254145
-
Pro
GGG
[ENA]
¡û
>W1710165056
FAOS01000001
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
2254221
2254145
-
Pro
GGG
[ENA]
¡û
>W1710556435
FOKF01000001
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
28037
27961
-
Pro
GGG
[ENA]
¡û
>W1710568805
FOTW01000011
Betaproteobacteria
Rugamonas rubra [FOTW]
210813
210889
+
Pro
GGG
[ENA]
¡û
>W1710605895
FWXJ01000009
Betaproteobacteria
Polynucleobacter kasalickyi VK13 [FWXJ]
143986
144062
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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