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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274731 (42 seq.)
>W1711224193
LXTW01000001
Gammaproteobacteria
Moraxella nonliquefaciens [LXTW]
87287
87211
-
Pro
GGG
[ENA]
¡û
>W1711268991
LZDM01000012
Gammaproteobacteria
Moraxella nonliquefaciens [LZDM]
78507
78431
-
Pro
GGG
[ENA]
¡û
>W1711269043
LZDN01000039
Gammaproteobacteria
Moraxella nonliquefaciens [LZDN]
15799
15723
-
Pro
GGG
[ENA]
¡û
>W1711269217
LZDR01000093
Gammaproteobacteria
Moraxella lacunata [LZDR]
62266
62342
+
Pro
GGG
[ENA]
¡û
>W1711282052
LZMS01000034
Gammaproteobacteria
Moraxella lacunata [LZMS]
12965
12889
-
Pro
GGG
[ENA]
¡û
>W131228762
AUGF01000007
Gammaproteobacteria
Moraxella caprae DSM 19149 [AUGF]
81969
81893
-
Pro
GGG
[ENA]
¡û
>W1711765724
MUXU01000022
Gammaproteobacteria
Moraxella caviae [MUXU]
53956
53880
-
Pro
GGG
[ENA]
¡û
>W1711765762
MUXV01000001
Gammaproteobacteria
Moraxella bovis [MUXV]
1485
1409
-
Pro
GGG
[ENA]
¡û
>W1711799848
MXAN01000054
Gammaproteobacteria
Moraxella lacunata [MXAN]
13600
13524
-
Pro
GGG
[ENA]
¡û
>W1711799919
MXAP01000015
Gammaproteobacteria
Moraxella equi [MXAP]
497
421
-
Pro
GGG
[ENA]
¡û
>WENV180006781
FLRZ01000001
[FLRZ] metagenome; saliva
25691
25767
+
Pro
GGG
[ENA]
¢þ
>W141055143
AOMT01000026
Gammaproteobacteria
Moraxella bovoculi 237 [AOMT]
182757
182833
+
Pro
GGG
[ENA]
¡û
>WENV180711401
ODFN01001154
[ODFN] human metagenome; G_DNA_Anterior nares
164
240
+
Pro
GGG
[ENA]
¢þ
>WENV180711622
ODFQ01000006
[ODFQ] human metagenome; G_DNA_Anterior nares
16149
16073
-
Pro
GGG
[ENA]
¢þ
>WENV180793932
ODIX01000242
[ODIX] human metagenome; G_DNA_Anterior nares
506
430
-
Pro
GGG
[ENA]
¢þ
>WENV180838868
ODKH01000006
[ODKH] human metagenome; G_DNA_Anterior nares
15831
15755
-
Pro
GGG
[ENA]
¢þ
>WENV180844751
ODKO01002038
[ODKO] human metagenome; G_DNA_Anterior nares
429
505
+
Pro
GGG
[ENA]
¢þ
>WENV180937558
ODTW01010086
[ODTW] human metagenome; G_DNA_Anterior nares
367
291
-
Pro
GGG
[ENA]
¢þ
>WENV180972458
ODUV01000316
[ODUV] human metagenome; G_DNA_Anterior nares
925
1001
+
Pro
GGG
[ENA]
¢þ
>WENV180984585
ODVH01002721
[ODVH] human metagenome; G_DNA_Anterior nares
117
193
+
Pro
GGG
[ENA]
¢þ
>WENV180984663
ODVI01000022
[ODVI] human metagenome; G_DNA_Anterior nares
16160
16084
-
Pro
GGG
[ENA]
¢þ
>WENV181114070
OEEO01000077
[OEEO] human metagenome; G_DNA_Supragingival plaque
61077
61001
-
Pro
GGG
[ENA]
¢þ
>WENV181199501
OERH01003020
[OERH] metagenome; water of meat washing
2011
1935
-
Pro
GGG
[ENA]
¢þ
>C181190909
CP030241
Gammaproteobacteria
Moraxella bovis [CP030241]
211984
211908
-
Pro
GGG
-
¡û
>C191008798
CP011380
Gammaproteobacteria
Moraxella bovoculi 57922 [CP011380]
1245399
1245323
-
Pro
GGG
-
¡û
>W1910977030
NKHK01000032
Gammaproteobacteria
Moraxella sp. VT-16-12 [NKHK]
23867
23791
-
Pro
GGG
[ENA]
¡û
>C161032141
CP011158
Gammaproteobacteria
Moraxella ovis 199/55 [CP011158]
1365006
1364930
-
Pro
GGG
[Ensembl]
¡û
>C161034469
CP011374
Gammaproteobacteria
Moraxella bovoculi 58069 [CP011374]
1277192
1277116
-
Pro
GGG
[Ensembl]
¡û
>C161034500
CP011376
Gammaproteobacteria
Moraxella bovoculi 22581 [CP011376]
1016333
1016409
+
Pro
GGG
-
¡û
>C161034569
CP011377
Gammaproteobacteria
Moraxella bovoculi 23343 [CP011377]
1262014
1261938
-
Pro
GGG
-
¡û
>C161034618
CP011378
Gammaproteobacteria
Moraxella bovoculi 28389 [CP011378]
1369445
1369369
-
Pro
GGG
[Ensembl]
¡û
>C161034669
CP011379
Gammaproteobacteria
Moraxella bovoculi 33362 [CP011379]
1292267
1292191
-
Pro
GGG
-
¡û
>C161034720
CP011381
Gammaproteobacteria
Moraxella bovoculi 58086 [CP011381]
1239626
1239550
-
Pro
GGG
-
¡û
>W1610071882
BCUK01000047
Gammaproteobacteria
Moraxella lacunata NBRC 102154 [BCUK]
5533
5609
+
Pro
GGG
[ENA]
¡û
>W1610076314
BCYQ01000074
Gammaproteobacteria
Moraxella oblonga NBRC 102422 [BCYQ]
1213
1137
-
Pro
GGG
[ENA]
¡û
>W1611008564
LXTW01000001
Gammaproteobacteria
Moraxella nonliquefaciens [LXTW]
87287
87211
-
Pro
GGG
[ENA]
¡û
>W1611029803
LZDM01000012
Gammaproteobacteria
Moraxella nonliquefaciens [LZDM]
78507
78431
-
Pro
GGG
[ENA]
¡û
>W1611029855
LZDN01000039
Gammaproteobacteria
Moraxella nonliquefaciens [LZDN]
15799
15723
-
Pro
GGG
[ENA]
¡û
>W1611030029
LZDR01000093
Gammaproteobacteria
Moraxella lacunata [LZDR]
62266
62342
+
Pro
GGG
[ENA]
¡û
>W1611041263
LZMS01000034
Gammaproteobacteria
Moraxella lacunata [LZMS]
12965
12889
-
Pro
GGG
[ENA]
¡û
>W1710069084
BCUK01000047
Gammaproteobacteria
Moraxella lacunata NBRC 102154 [BCUK]
5533
5609
+
Pro
GGG
[ENA]
¡û
>W1710074129
BCYQ01000074
Gammaproteobacteria
Moraxella oblonga NBRC 102422 [BCYQ]
1213
1137
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK