This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274750 (76 seq.)
>W1711326694
MBFW01000047
Gammaproteobacteria
Shewanella algae [MBFW]
7362
7438
+
Pro
TGG
[ENA]
¡û
>W1711326705
MBFW01000056
Gammaproteobacteria
Shewanella algae [MBFW]
125136
125212
+
Pro
TGG
[ENA]
¡û
>W1711326706
MBFW01000056
Gammaproteobacteria
Shewanella algae [MBFW]
125359
125435
+
Pro
TGG
[ENA]
¡û
>W1711326719
MBFW01000061
Gammaproteobacteria
Shewanella algae [MBFW]
60936
60860
-
Pro
TGG
[ENA]
¡û
>W1711360886
MDKA01000033
Gammaproteobacteria
Shewanella algae [MDKA]
28568
28492
-
Pro
TGG
[ENA]
¡û
>W141227764
BALL01000001
Gammaproteobacteria
Shewanella algae JCM 14758 [BALL]
170569
170645
+
Pro
TGG
[ENA]
¡û
>W141227802
BALL01000053
Gammaproteobacteria
Shewanella algae JCM 14758 [BALL]
19241
19317
+
Pro
TGG
[ENA]
¡û
>W141227803
BALL01000053
Gammaproteobacteria
Shewanella algae JCM 14758 [BALL]
19365
19441
+
Pro
TGG
[ENA]
¡û
>W141227955
BALO01000010
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
14100
14024
-
Pro
TGG
[ENA]
¡û
>W141227967
BALO01000018
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
56179
56103
-
Pro
TGG
[ENA]
¡û
>W141276195
JADP01000007
Gammaproteobacteria
Shewanella sp. 38A_GOM-205m [JADP]
203177
203253
+
Pro
TGG
[ENA]
¡û
>W141276196
JADP01000007
Gammaproteobacteria
Shewanella sp. 38A_GOM-205m [JADP]
203301
203377
+
Pro
TGG
[ENA]
¡û
>W141276198
JADP01000009
Gammaproteobacteria
Shewanella sp. 38A_GOM-205m [JADP]
55880
55804
-
Pro
TGG
[ENA]
¡û
>W141276199
JADP01000009
Gammaproteobacteria
Shewanella sp. 38A_GOM-205m [JADP]
55756
55680
-
Pro
TGG
[ENA]
¡û
>WENV170658144
JTFP01059573
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
100
24
-
Pro
TGG
[ENA]
¢þ
>C191015494
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
3441454
3441530
+
Pro
TGG
-
¡û
>C191015566
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
1166215
1166139
-
Pro
TGG
-
¡û
>C191015567
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
1166091
1166015
-
Pro
TGG
-
¡û
>C191107813
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
2202347
2202423
+
Pro
TGG
-
¡û
>C191107839
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
4822020
4821944
-
Pro
TGG
-
¡û
>C191107840
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
4821797
4821721
-
Pro
TGG
-
¡û
>W1910617483
LIRM01000052
Gammaproteobacteria
Shewanella algae MN-01 [LIRM]
57128
57052
-
Pro
TGG
[ENA]
¡û
>W1910617493
LIRM01000077
Gammaproteobacteria
Shewanella algae MN-01 [LIRM]
358
282
-
Pro
TGG
[ENA]
¡û
>W1910617494
LIRM01000077
Gammaproteobacteria
Shewanella algae MN-01 [LIRM]
135
59
-
Pro
TGG
[ENA]
¡û
>W1910645024
LVCY01000019
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
79220
79296
+
Pro
TGG
[ENA]
¡û
>W1910645025
LVCY01000019
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
79443
79519
+
Pro
TGG
[ENA]
¡û
>W1910645026
LVCY01000021
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
27393
27469
+
Pro
TGG
[ENA]
¡û
>W1910645063
LVDH01000001
Gammaproteobacteria
Shewanella algae AC [LVDH]
201326
201402
+
Pro
TGG
[ENA]
¡û
>W1910645142
LVDH01000016
Gammaproteobacteria
Shewanella algae AC [LVDH]
12250
12174
-
Pro
TGG
[ENA]
¡û
>W1910645143
LVDH01000016
Gammaproteobacteria
Shewanella algae AC [LVDH]
12126
12050
-
Pro
TGG
[ENA]
¡û
>W1910645159
LVDK01000001
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
874217
874141
-
Pro
TGG
[ENA]
¡û
>W1910645182
LVDK01000003
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
14351
14275
-
Pro
TGG
[ENA]
¡û
>W1910645183
LVDK01000003
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
14129
14053
-
Pro
TGG
[ENA]
¡û
>W1910645252
LVDU01000002
Gammaproteobacteria
Shewanella algae YHL [LVDU]
192701
192625
-
Pro
TGG
[ENA]
¡û
>W1910645299
LVDU01000010
Gammaproteobacteria
Shewanella algae YHL [LVDU]
14327
14251
-
Pro
TGG
[ENA]
¡û
>W1910645300
LVDU01000010
Gammaproteobacteria
Shewanella algae YHL [LVDU]
14203
14127
-
Pro
TGG
[ENA]
¡û
>W1910905514
NGVS01000006
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
190120
190196
+
Pro
TGG
[ENA]
¡û
>W1910905549
NGVS01000014
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
369311
369387
+
Pro
TGG
[ENA]
¡û
>W1910905550
NGVS01000014
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
369534
369610
+
Pro
TGG
[ENA]
¡û
>W1910927079
NIJK01000037
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
24924
25000
+
Pro
TGG
[ENA]
¡û
>W1910927080
NIJK01000037
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
25063
25139
+
Pro
TGG
[ENA]
¡û
>W1910927081
NIJK01000037
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
25202
25278
+
Pro
TGG
[ENA]
¡û
>W1910927082
NIJK01000037
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
25341
25417
+
Pro
TGG
[ENA]
¡û
>W1910927084
NIJK01000038
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
60279
60203
-
Pro
TGG
[ENA]
¡û
>W1910927165
NIJL01000019
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
110944
111020
+
Pro
TGG
[ENA]
¡û
>W1910927208
NIJL01000036
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
436541
436617
+
Pro
TGG
[ENA]
¡û
>W1910927209
NIJL01000036
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
436665
436741
+
Pro
TGG
[ENA]
¡û
>W1910927210
NIJL01000036
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
436888
436964
+
Pro
TGG
[ENA]
¡û
>W1910927233
NIJM01000005
Gammaproteobacteria
Shewanella chilikensis JC5 [NIJM]
35282
35358
+
Pro
TGG
[ENA]
¡û
>W1810585828
QFDC01000001
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
271762
271686
-
Pro
TGG
[ENA]
¡û
>W1810585829
QFDC01000001
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
271638
271562
-
Pro
TGG
[ENA]
¡û
>W1810585847
QFDC01000006
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
128902
128826
-
Pro
TGG
[ENA]
¡û
>W1810671654
QJSY01000008
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
88332
88256
-
Pro
TGG
[ENA]
¡û
>W1810671703
QJSY01000035
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
28375
28451
+
Pro
TGG
[ENA]
¡û
>W1810671704
QJSY01000035
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
28514
28590
+
Pro
TGG
[ENA]
¡û
>W1510077673
CDQH01000016
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
436295
436371
+
Pro
TGG
[ENA]
¡û
>W1510077747
CDQH01000025
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
48080
48004
-
Pro
TGG
[ENA]
¡û
>W1510077748
CDQH01000025
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
47857
47781
-
Pro
TGG
[ENA]
¡û
>W1511306472
JPMA01000001
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
31995
31919
-
Pro
TGG
[ENA]
¡û
>W1511306509
JPMA01000006
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
58018
57942
-
Pro
TGG
[ENA]
¡û
>W1511306510
JPMA01000006
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
57894
57818
-
Pro
TGG
[ENA]
¡û
>W1511477925
JWGX01000015
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
89245
89321
+
Pro
TGG
[ENA]
¡û
>W1511477961
JWGX01000045
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
47845
47921
+
Pro
TGG
[ENA]
¡û
>W1511477962
JWGX01000045
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
47984
48060
+
Pro
TGG
[ENA]
¡û
>W1610042079
BAXN01000005
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
212701
212777
+
Pro
TGG
[ENA]
¡û
>W1610042080
BAXN01000005
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
212923
212999
+
Pro
TGG
[ENA]
¡û
>W1610042110
BAXN01000027
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
9789
9865
+
Pro
TGG
[ENA]
¡û
>W1610077857
BCZT01000014
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
55963
55887
-
Pro
TGG
[ENA]
¡û
>W1610077883
BCZT01000075
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
5328
5404
+
Pro
TGG
[ENA]
¡û
>W1610077884
BCZT01000075
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
5452
5528
+
Pro
TGG
[ENA]
¡û
>W1710039173
BAXN01000005
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
212701
212777
+
Pro
TGG
[ENA]
¡û
>W1710039174
BAXN01000005
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
212923
212999
+
Pro
TGG
[ENA]
¡û
>W1710039204
BAXN01000027
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
9789
9865
+
Pro
TGG
[ENA]
¡û
>W1710075415
BCZT01000014
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
55963
55887
-
Pro
TGG
[ENA]
¡û
>W1710075441
BCZT01000075
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
5328
5404
+
Pro
TGG
[ENA]
¡û
>W1710075442
BCZT01000075
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
5452
5528
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK