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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274751 (38 seq.)
>W1711326695
MBFW01000047
Gammaproteobacteria
Shewanella algae [MBFW]
7506
7582
+
Arg
TCT
[ENA]
¡û
>W1711326720
MBFW01000061
Gammaproteobacteria
Shewanella algae [MBFW]
60792
60716
-
Arg
TCT
[ENA]
¡û
>W1711360887
MDKA01000033
Gammaproteobacteria
Shewanella algae [MDKA]
28424
28348
-
Arg
TCT
[ENA]
¡û
>C022370
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
2967799
2967723
-
Arg
TCT
[Ensembl]
¡û
>C022469
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
3028446
3028370
-
Arg
TCT
[Ensembl]
¡û
>W141227765
BALL01000001
Gammaproteobacteria
Shewanella algae JCM 14758 [BALL]
170713
170789
+
Arg
TCT
[ENA]
¡û
>W141227968
BALO01000018
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
56035
55959
-
Arg
TCT
[ENA]
¡û
>W141276200
JADP01000009
Gammaproteobacteria
Shewanella sp. 38A_GOM-205m [JADP]
55612
55536
-
Arg
TCT
[ENA]
¡û
>WENV170657884
JTFP01029449
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
596
520
-
Arg
TCT
[ENA]
¢þ
>C191015495
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
3441598
3441674
+
Arg
TCT
-
¡û
>C191107814
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
2202491
2202567
+
Arg
TCT
-
¡û
>C191148718
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
3984518
3984594
+
Arg
TCT
-
¡û
>C191155883
CP037951
Gammaproteobacteria
Parashewanella tropica MEBiC05444 [CP037951]
1590460
1590536
+
Arg
TCT
-
¡û
>C191155968
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
1474237
1474313
+
Arg
TCT
-
¡û
>C191187044
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
1796439
1796515
+
Arg
TCT
-
¡û
>W141801967
JPEO01000003
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
168408
168332
-
Arg
TCT
[ENA]
¡û
>W1910617484
LIRM01000052
Gammaproteobacteria
Shewanella algae MN-01 [LIRM]
56984
56908
-
Arg
TCT
[ENA]
¡û
>W1910645027
LVCY01000021
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
27537
27613
+
Arg
TCT
[ENA]
¡û
>W1910645064
LVDH01000001
Gammaproteobacteria
Shewanella algae AC [LVDH]
201470
201546
+
Arg
TCT
[ENA]
¡û
>W1910645160
LVDK01000001
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
874073
873997
-
Arg
TCT
[ENA]
¡û
>W1910645253
LVDU01000002
Gammaproteobacteria
Shewanella algae YHL [LVDU]
192557
192481
-
Arg
TCT
[ENA]
¡û
>W1910905515
NGVS01000006
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
190264
190340
+
Arg
TCT
[ENA]
¡û
>W1910927085
NIJK01000038
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
60135
60059
-
Arg
TCT
[ENA]
¡û
>W1910927166
NIJL01000019
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
111088
111164
+
Arg
TCT
[ENA]
¡û
>W1910927234
NIJM01000005
Gammaproteobacteria
Shewanella chilikensis JC5 [NIJM]
35426
35502
+
Arg
TCT
[ENA]
¡û
>W1911581930
PGVH01000040
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
167318
167242
-
Arg
TCT
[ENA]
¡û
>W1911809498
QYYH01000098
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
9243
9319
+
Arg
TCT
[ENA]
¡û
>W1911812344
QZEI01000037
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
28783
28707
-
Arg
TCT
[ENA]
¡û
>W1810585848
QFDC01000006
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
128758
128682
-
Arg
TCT
[ENA]
¡û
>W1810671655
QJSY01000008
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
88188
88112
-
Arg
TCT
[ENA]
¡û
>W1810786572
QRCS01000014
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
100760
100684
-
Arg
TCT
[ENA]
¡û
>W1510077674
CDQH01000016
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
436439
436515
+
Arg
TCT
[ENA]
¡û
>W1511306473
JPMA01000001
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
31851
31775
-
Arg
TCT
[ENA]
¡û
>W1511477926
JWGX01000015
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
89389
89465
+
Arg
TCT
[ENA]
¡û
>W1610042111
BAXN01000027
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
9933
10009
+
Arg
TCT
[ENA]
¡û
>W1610077858
BCZT01000014
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
55819
55743
-
Arg
TCT
[ENA]
¡û
>W1710039205
BAXN01000027
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
9933
10009
+
Arg
TCT
[ENA]
¡û
>W1710075416
BCZT01000014
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
55819
55743
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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