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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27491 (69 seq.)
>W1710777988
LJCO01000014
Bacillota
Alicyclobacillus ferrooxydans [LJCO]
95437
95348
-
Ser
TGA
[ENA]
¡û
>W1710885603
LMXH01000014
Bacillota
Paenibacillus sp. FJAT-26967 [LMXH]
50484
50396
-
Ser
TGA
[ENA]
¡û
>W1711010073
LQRA01000058
Bacillota
Paenibacillus elgii [LQRA]
161922
161833
-
Ser
TGA
[ENA]
¡û
>W1711391629
MELW01000320
Bacillota
Alicyclobacillus sp. RIFOXYA1_FULL_53_8 [MELW]
18573
18662
+
Ser
TGA
[ENA]
¡û
>W1711677130
MRTH01000014
Bacillota
Paenibacillus sp. FSL H7-0331 [MRTH]
191954
191865
-
Ser
TGA
[ENA]
¡û
>W1711904520
MZNT01000017
Bacillota
Paenibacillus sp. 32352 [MZNT]
6561
6650
+
Ser
TGA
[ENA]
¡û
>C171099961
CP019794
Bacillota
Paenibacillus larvae subsp. pulvifaciens ATCC 13537 [CP019794]
2420798
2420887
+
Ser
TGA
-
¡û
>C171104921
CP020327
Bacillota
Paenibacillus larvae subsp. pulvifaciens CCM 38 [CP020327]
2084500
2084589
+
Ser
TGA
-
¡û
>C171109098
CP020557
Bacillota
Paenibacillus larvae subsp. pulvifaciens SAG 10367 [CP020557]
2281597
2281686
+
Ser
TGA
-
¡û
>W131177550
ARKW01000037
Bacillota
Paenibacillus ginsengihumi DSM 21568 [ARKW]
468
382
-
Ser
TGA
[ENA]
¡û
>W131236324
AUMH01000015
Bacillota
Alicyclobacillus herbarius DSM 13609 [AUMH]
95319
95230
-
Ser
TGA
[ENA]
¡û
>W131000523
AGEN01000033
Bacillota
Paenibacillus sp. HGH0039 [AGEN]
8903
8992
+
Ser
TGA
[ENA]
¡û
>w017350
AARF01000325
Bacillota
Paenibacillus larvae subsp. larvae BRL-230010 [AARF]
14318
14227
-
Ser
TGA
[ENA]
¡û
>W141000937
ADFW01000001
Bacillota
Paenibacillus larvae subsp. larvae DSM 25719 [ADFW]
2495346
2495435
+
Ser
TGA
[ENA]
¡û
>W141085122
AURB01000112
Bacillota
Alicyclobacillus acidoterrestris ATCC 49025 [AURB]
7319
7230
-
Ser
TGA
[ENA]
¡û
>W141237905
BBJT01000012
Bacillota
Paenibacillus chitinolyticus NBRC 15660 [BBJT]
182560
182471
-
Ser
TGA
[ENA]
¡û
>WENV170708199
LNAP01057805
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1250
1338
+
Ser
TGA
[ENA]
¢þ
>W141462584
JFHX01000081
Bacillota
Paenibacillus ehimensis A2 [JFHX]
6079
6168
+
Ser
TGA
[ENA]
¡û
>C181038434
CP019651
Bacillota
Paenibacillus larvae subsp. larvae ERIC_I [CP019651]
21574
21663
+
Ser
TGA
-
¡û
>C181038513
CP019652
Bacillota
Paenibacillus larvae subsp. larvae DSM 25430 DSM 25430; ERIC_II [CP019652]
21469
21558
+
Ser
TGA
-
¡û
>C181038592
CP019655
Bacillota
Paenibacillus larvae subsp. larvae Eric_III [CP019655]
21650
21739
+
Ser
TGA
-
¡û
>C181038669
CP019659
Bacillota
Paenibacillus larvae subsp. larvae Eric_IV [CP019659]
21651
21740
+
Ser
TGA
-
¡û
>C191044787
CP026520
Bacillota
Paenibacillus chitinolyticus KCCM 41400 [CP026520]
477465
477554
+
Ser
TGA
-
¡û
>W141702811
JMLS01000022
Bacillota
Paenibacillus sp. UNC451MF [JMLS]
6253
6342
+
Ser
TGA
[ENA]
¡û
>W141730558
JNIL01000001
Bacillota
Alicyclobacillus macrosporangiidus CPP55 [JNIL]
3755335
3755424
+
Ser
TGA
[ENA]
¡û
>W141754314
JNVM01000011
Bacillota
Paenibacillus tyrfis MSt1 [JNVM]
6305
6394
+
Ser
TGA
[ENA]
¡û
>W1910154639
BILX01000059
Bacillota
Paenibacillus ehimensis NBRC 15659 [BILX]
4343
4432
+
Ser
TGA
[ENA]
¡û
>W1910154843
BIMB01000105
Bacillota
Paenibacillus elgii NBRC 100335 [BIMB]
123
34
-
Ser
TGA
[ENA]
¡û
>W1910155109
BIMH01000040
Bacillota
Paenibacillus validus NBRC 15382 [BIMH]
39745
39656
-
Ser
TGA
[ENA]
¡û
>W1910175737
BJCS01000011
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
6161
6250
+
Ser
TGA
[ENA]
¡û
>C141001398
CP003355
Bacillota
Paenibacillus larvae subsp. larvae DSM 25430 [CP003355]
21563
21652
+
Ser
TGA
[Ensembl]
¡û
>W1910505718
FYEP01000017
Bacillota
Paenibacillus tyrfis B69 [FYEP]
6353
6442
+
Ser
TGA
[ENA]
¡û
>W1910913923
NHRJ02000017
Bacillota
Paenibacillus xerothermodurans ATCC 27380 [NHRJ]
79955
79866
-
Ser
TGA
[ENA]
¡û
>W1911071765
NMQW01000049
Bacillota
Paenibacillus rigui JCM 16352 [NMQW]
147052
146963
-
Ser
TGA
[ENA]
¡û
>W1810402851
PYHP01000104
Bacillota
Paenibacillus elgii AC13 [PYHP]
173933
173844
-
Ser
TGA
[ENA]
¡û
>C11117403
CP002869
Bacillota
Paenibacillus mucilaginosus KNP414 [CP002869]
21635
21724
+
Ser
TGA
[Ensembl]
¡û
>W11130198
ADZY01000178
Bacillota
Paenibacillus larvae subsp. larvae B-3650 [ADZY]
60672
60583
-
Ser
TGA
[ENA]
¡û
>W1511499690
JXAK01000073
Bacillota
Paenibacillus sp. VKM B-2647 [JXAK]
19762
19674
-
Ser
TGA
[ENA]
¡û
>W1511585002
LAWY01000016
Bacillota
Paenibacillus larvae MEX14 [LAWY]
6195
6284
+
Ser
TGA
[ENA]
¡û
>W11158498
AFDH01000143
Bacillota
Paenibacillus sp. HGF7 [AFDH]
168228
168139
-
Ser
TGA
[ENA]
¡û
>W11163542
AFHW01000138
Bacillota
Paenibacillus elgii B69 [AFHW]
17566
17477
-
Ser
TGA
[ENA]
¡û
>C121012928
CP003422
Bacillota
Paenibacillus mucilaginosus K02 [CP003422]
21879
21968
+
Ser
TGA
[Ensembl]
¡û
>C161058244
CP013652
Bacillota
Paenibacillus naphthalenovorans 32O-Y [CP013652]
4258194
4258105
-
Ser
TGA
[Ensembl]
¡û
>W1610048306
BBEA01000081
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
6031
6120
+
Ser
TGA
[ENA]
¡û
>W1610048383
BBEB01000080
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
6171
6260
+
Ser
TGA
[ENA]
¡û
>W1610048446
BBEC01000074
Bacillota
Paenibacillus sp. YK5 [BBEC]
6014
6103
+
Ser
TGA
[ENA]
¡û
>W1610067196
BCQI01000012
Bacillota
Alicyclobacillus acidiphilus NBRC 100859 [BCQI]
6340
6251
-
Ser
TGA
[ENA]
¡û
>W1610067839
BCQV01000010
Bacillota
Alicyclobacillus shizuokensis NBRC 103103 [BCQV]
66366
66277
-
Ser
TGA
[ENA]
¡û
>W1610068825
BCRP01000038
Bacillota
Alicyclobacillus kakegawensis NBRC 103104 [BCRP]
1590
1679
+
Ser
TGA
[ENA]
¡û
>W121103438
AKZN01000076
Bacillota
Alicyclobacillus hesperidum URH17-3-68 [AKZN]
9917
9828
-
Ser
TGA
[ENA]
¡û
>W1610543222
JTHN01000177
Bacillota
Paenibacillus sp. A3 [JTHN]
2444
2533
+
Ser
TGA
[ENA]
¡û
>W1610548804
JXBW01000003
Bacillota
Alicyclobacillus tengchongensis [JXBW]
176580
176669
+
Ser
TGA
[ENA]
¡û
>W1610642174
LJCO01000014
Bacillota
Alicyclobacillus ferrooxydans [LJCO]
95437
95348
-
Ser
TGA
[ENA]
¡û
>W1610747529
LMXH01000014
Bacillota
Paenibacillus sp. FJAT-26967 [LMXH]
50484
50396
-
Ser
TGA
[ENA]
¡û
>W1610858593
LQRA01000058
Bacillota
Paenibacillus elgii [LQRA]
161922
161833
-
Ser
TGA
[ENA]
¡û
>W1710044816
BBEA01000081
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
6031
6120
+
Ser
TGA
[ENA]
¡û
>W1710044893
BBEB01000080
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
6171
6260
+
Ser
TGA
[ENA]
¡û
>W1710044956
BBEC01000074
Bacillota
Paenibacillus sp. YK5 [BBEC]
6014
6103
+
Ser
TGA
[ENA]
¡û
>W1710064569
BCQI01000012
Bacillota
Alicyclobacillus acidiphilus NBRC 100859 [BCQI]
6340
6251
-
Ser
TGA
[ENA]
¡û
>W1710065212
BCQV01000010
Bacillota
Alicyclobacillus shizuokensis NBRC 103103 [BCQV]
66366
66277
-
Ser
TGA
[ENA]
¡û
>W1710066198
BCRP01000038
Bacillota
Alicyclobacillus kakegawensis NBRC 103104 [BCRP]
1590
1679
+
Ser
TGA
[ENA]
¡û
>W1710505508
FMTT01000017
Bacillota
Paenibacillus tianmuensis [FMTT]
6345
6434
+
Ser
TGA
[ENA]
¡û
>W1710518338
FNDY01000017
Bacillota
Paenibacillus naphthalenovorans [FNDY]
79704
79615
-
Ser
TGA
[ENA]
¡û
>W1710529955
FNOJ01000020
Bacillota
Alicyclobacillus hesperidum [FNOJ]
10146
10057
-
Ser
TGA
[ENA]
¡û
>W1710539289
FNVF01000010
Bacillota
Paenibacillus sp. UNC499MF [FNVF]
186458
186369
-
Ser
TGA
[ENA]
¡û
>W1710567951
FOTE01000011
Bacillota
Paenibacillus sp. 1_12 [FOTE]
6417
6506
+
Ser
TGA
[ENA]
¡û
>W1710578753
FPBV01000001
Bacillota
Alicyclobacillus macrosporangiidus [FPBV]
456746
456835
+
Ser
TGA
[ENA]
¡û
>W1710646353
JTHN01000177
Bacillota
Paenibacillus sp. A3 [JTHN]
2444
2533
+
Ser
TGA
[ENA]
¡û
>W1710652420
JXBW01000003
Bacillota
Alicyclobacillus tengchongensis [JXBW]
176580
176669
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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