This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274962 (90 seq.)
>W1710869809
LMKA01000002
Bacteroidota
Chryseobacterium sp. Leaf201 [LMKA]
35062
34986
-
His
GTG
[ENA]
¡û
>W1710876604
LMPJ01000008
Bacteroidota
Chryseobacterium sp. Leaf180 [LMPJ]
184581
184505
-
His
GTG
[ENA]
¡û
>W1711314244
MAUH01000006
Bacteroidota
Chryseobacterium sp. CBo1 [MAUH]
102548
102623
+
His
GTG
[ENA]
¡û
>C171016689
CP012388
Bacteroidota
Flavobacterium psychrophilum Z1 [CP012388]
3679977
3680052
+
His
GTG
-
¡û
>W131224675
AUCZ01000004
Bacteroidota
Flavobacterium suncheonense DSM 17707 [AUCZ]
316539
316613
+
His
GTG
[ENA]
¡û
>W131229194
AUGP01000017
Bacteroidota
Flavobacterium subsaxonicum DSM 21790 [AUGP]
1671
1597
-
His
GTG
[ENA]
¡û
>W131237053
AUMU01000011
Bacteroidota
Chryseobacterium gregarium DSM 19109 [AUMU]
89420
89344
-
His
GTG
[ENA]
¡û
>WENV181223493
OFDC01022896
[OFDC] hot springs metagenome; Water
508
433
-
His
GTG
[ENA]
¢þ
>WENV181836300
OGVJ01003906
[OGVJ] freshwater metagenome; freshwater
1179
1254
+
His
GTG
[ENA]
¢þ
>WENV181838540
OGVN01002744
[OGVN] freshwater metagenome; freshwater
1309
1384
+
His
GTG
[ENA]
¢þ
>WENV181839006
OGVN01050732
[OGVN] freshwater metagenome; freshwater
228
303
+
His
GTG
[ENA]
¢þ
>WENV183736944
PJUD01000113
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
57136
57061
-
His
GTG
[ENA]
¢þ
>WENV183736945
PJUD01000113
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
57022
56947
-
His
GTG
[ENA]
¢þ
>WENV183738717
PJUE01000127
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
57136
57061
-
His
GTG
[ENA]
¢þ
>WENV183738718
PJUE01000127
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
57022
56947
-
His
GTG
[ENA]
¢þ
>WENV183739945
PJUF01000088
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
57136
57061
-
His
GTG
[ENA]
¢þ
>WENV183739946
PJUF01000088
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
57022
56947
-
His
GTG
[ENA]
¢þ
>WENV170645709
JPYU01013837
[JPYU] wastewater metagenome; domestic wastewater sediment without any treatment
593
668
+
His
GTG
[ENA]
¢þ
>C181061657
CP022282
Bacteroidota
Chryseobacterium sp. T16E-39 [CP022282]
2667337
2667262
-
His
GTG
-
¡û
>C181075435
CP023049
Bacteroidota
Chryseobacterium piperi ATCC BAA-1782 [CP023049]
3790573
3790648
+
His
GTG
-
¡û
>C191115444
CP033918
Bacteroidota
Chryseobacterium sp. G0186 [CP033918]
2666536
2666461
-
His
GTG
-
¡û
>C191115483
CP033920
Bacteroidota
Chryseobacterium carnipullorum G0188 [CP033920]
1976575
1976650
+
His
GTG
-
¡û
>C191115543
CP033921
Bacteroidota
Chryseobacterium carnipullorum F9942 [CP033921]
520
595
+
His
GTG
-
¡û
>C191115651
CP033922
Bacteroidota
Chryseobacterium sp. G0162 [CP033922]
3029304
3029379
+
His
GTG
-
¡û
>C191115783
CP033923
Bacteroidota
Chryseobacterium nakagawai G0041 [CP033923]
2540560
2540485
-
His
GTG
-
¡û
>C191115875
CP033924
Bacteroidota
Chryseobacterium lactis KC_1864 [CP033924]
634657
634582
-
His
GTG
-
¡û
>C191115940
CP033925
Bacteroidota
Chryseobacterium lactis G0197 [CP033925]
4137981
4137906
-
His
GTG
-
¡û
>C191116033
CP033926
Bacteroidota
Chryseobacterium joostei DSM 16927 [CP033926]
2677056
2676981
-
His
GTG
-
¡û
>C191209996
LR134386
Bacteroidota
Chryseobacterium nakagawai NCTC13529 [LR134386]
5222604
5222529
-
His
GTG
-
¡û
>W141809197
JPRH01000009
Bacteroidota
Chryseobacterium soli [JPRH]
91147
91222
+
His
GTG
[ENA]
¡û
>W141809251
JPRI01000006
Bacteroidota
Chryseobacterium vrystaatense [JPRI]
153773
153848
+
His
GTG
[ENA]
¡û
>W141809273
JPRJ01000002
Bacteroidota
Chryseobacterium piperi [JPRJ]
82691
82766
+
His
GTG
[ENA]
¡û
>W141809442
JPRN01000001
Bacteroidota
Chryseobacterium sp. JM1 [JPRN]
104445
104521
+
His
GTG
[ENA]
¡û
>W141809603
JPRP01000004
Bacteroidota
Chryseobacterium formosense [JPRP]
100910
100985
+
His
GTG
[ENA]
¡û
>W1910341204
FTPE01000018
Bacteroidota
Chryseobacterium sp. JV274 [FTPE]
130850
130925
+
His
GTG
[ENA]
¡û
>W1910808769
MUGP01000010
Bacteroidota
Chryseobacterium shigense DSM 17126 [MUGP]
88943
89018
+
His
GTG
[ENA]
¡û
>W1911566372
PCOU01000004
Bacteroidota
Chryseobacterium sp. MYb7 [PCOU]
85591
85666
+
His
GTG
[ENA]
¡û
>W1911647576
QAJO01000013
Bacteroidota
Chryseobacterium sp. KBW03 [QAJO]
40620
40545
-
His
GTG
[ENA]
¡û
>W1911680406
QICI01000031
Bacteroidota
Chryseobacterium sp. CH21 [QICI]
24236
24311
+
His
GTG
[ENA]
¡û
>W1911701232
QNUF01000001
Bacteroidota
Chryseobacterium rhizosphaerae KCTC 22548 [QNUF]
150211
150286
+
His
GTG
[ENA]
¡û
>W1911701407
QNUH01000056
Bacteroidota
Chryseobacterium elymi KCTC 22547 [QNUH]
1507
1432
-
His
GTG
[ENA]
¡û
>W1911701789
QNVT01000007
Bacteroidota
Chryseobacterium pennae 1_F178 [QNVT]
77328
77253
-
His
GTG
[ENA]
¡û
>W1911701958
QNVV01000010
Bacteroidota
Chryseobacterium pennipullorum 7_F195 [QNVV]
92859
92784
-
His
GTG
[ENA]
¡û
>W1911749765
QWIU01000002
Bacteroidota
Chryseobacterium nematophagum JUb129 [QWIU]
4145759
4145684
-
His
GTG
[ENA]
¡û
>W1810071768
PEEX01000001
Bacteroidota
Chryseobacterium sp. 52 [PEEX]
5128060
5127985
-
His
GTG
[ENA]
¡û
>W1810234031
PPED02000002
Bacteroidota
Chryseobacterium phosphatilyticum ISE14 [PPED]
131900
131975
+
His
GTG
[ENA]
¡û
>W1810234256
PPEG02000009
Bacteroidota
Chryseobacterium viscerum 687B-08 [PPEG]
129983
130058
+
His
GTG
[ENA]
¡û
>W1810234302
PPEH01000004
Bacteroidota
Chryseobacterium lactis NCTC11390 [PPEH]
133645
133720
+
His
GTG
[ENA]
¡û
>W1810234388
PPEI02000004
Bacteroidota
Chryseobacterium oncorhynchi 701B-08 [PPEI]
373218
373143
-
His
GTG
[ENA]
¡û
>W1810260929
PQNY01000009
Bacteroidota
Flavobacterium croceum DSM 17960 [PQNY]
123533
123458
-
His
GTG
[ENA]
¡û
>W1810385651
PXUE01000001
Bacteroidota
Chryseobacterium aurantiacum F30 [PXUE]
114786
114861
+
His
GTG
[ENA]
¡û
>W1810475457
QAJA01000867
Bacteroidota
Chryseobacterium sp. HMWF028 [QAJA]
2646
2721
+
His
GTG
[ENA]
¡û
>W1810696107
QLSZ01000013
Bacteroidota
Flavobacterium aciduliphilum DSM 25663 [QLSZ]
299
224
-
His
GTG
[ENA]
¡û
>W1810707189
QNFY01000004
Bacteroidota
Chryseobacterium lathyri KCTC 22544 [QNFY]
274323
274248
-
His
GTG
[ENA]
¡û
>W1810762865
QQAR01000013
Bacteroidota
Flavobacterium sp. AG291 [QQAR]
115419
115495
+
His
GTG
[ENA]
¡û
>W1810860706
QTTJ01000001
Bacteroidota
Chryseobacterium sp. 1335 [QTTJ]
116611
116686
+
His
GTG
[ENA]
¡û
>C151002607
AP014624
Bacteroidota
Chryseobacterium sp. StRB126 [AP014624]
5111881
5111806
-
His
GTG
[Ensembl]
¡û
>W1511432069
JUGG01000010
Bacteroidota
Chryseobacterium sp. YR460 [JUGG]
52898
52974
+
His
GTG
[ENA]
¡û
>W1511432168
JUGI01000001
Bacteroidota
Chryseobacterium sp. YR459 [JUGI]
40677
40602
-
His
GTG
[ENA]
¡û
>W1511432476
JUGN01000017
Bacteroidota
Chryseobacterium sp. YR480 [JUGN]
132698
132773
+
His
GTG
[ENA]
¡û
>W1511432495
JUGO01000007
Bacteroidota
Chryseobacterium sp. YR485 [JUGO]
133087
133162
+
His
GTG
[ENA]
¡û
>W1511432922
JUGW01000006
Bacteroidota
Chryseobacterium sp. CF356 [JUGW]
105752
105677
-
His
GTG
[ENA]
¡û
>W1511432984
JUGX01000007
Bacteroidota
Chryseobacterium sp. OV715 [JUGX]
137712
137636
-
His
GTG
[ENA]
¡û
>W1511433331
JUHD01000010
Bacteroidota
Chryseobacterium sp. OV705 [JUHD]
138211
138286
+
His
GTG
[ENA]
¡û
>W1511587171
LAZY01000066
Bacteroidota
Chryseobacterium indologenes J31 [LAZY]
95963
96038
+
His
GTG
[ENA]
¡û
>W1511685130
LFND01000007
Bacteroidota
Chryseobacterium angstadtii KM [LFND]
157168
157243
+
His
GTG
[ENA]
¡û
>W1511685205
LFNE01000010
Bacteroidota
Chryseobacterium sp. FH2 [LFNE]
169354
169278
-
His
GTG
[ENA]
¡û
>C161042845
CP012586
Bacteroidota
Flavobacterium psychrophilum Z2 [CP012586]
3679978
3680053
+
His
GTG
-
¡û
>C161055074
CP013293
Bacteroidota
Chryseobacterium sp. IHB B 17019 [CP013293]
2932931
2932856
-
His
GTG
[Ensembl]
¡û
>W1610436707
FJVD01000008
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
3485723
3485648
-
His
GTG
[ENA]
¡û
>W1610535035
JRLW01000001
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
317224
317298
+
His
GTG
[ENA]
¡û
>W1610535138
JRLY01000010
Bacteroidota
Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]
1274
1200
-
His
GTG
[ENA]
¡û
>W1610732155
LMKA01000002
Bacteroidota
Chryseobacterium sp. Leaf201 [LMKA]
35062
34986
-
His
GTG
[ENA]
¡û
>W1610738950
LMPJ01000008
Bacteroidota
Chryseobacterium sp. Leaf180 [LMPJ]
184581
184505
-
His
GTG
[ENA]
¡û
>W1611059119
MAUH01000006
Bacteroidota
Chryseobacterium sp. CBo1 [MAUH]
102548
102623
+
His
GTG
[ENA]
¡û
>W1710436443
FJVD01000008
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
3485723
3485648
-
His
GTG
[ENA]
¡û
>W1710518814
FNEG01000006
Bacteroidota
Chryseobacterium jejuense [FNEG]
140956
141031
+
His
GTG
[ENA]
¡û
>W1710570427
FOVD01000005
Bacteroidota
Chryseobacterium oleae [FOVD]
233766
233691
-
His
GTG
[ENA]
¡û
>W1710577144
FPAP01000005
Bacteroidota
Chryseobacterium formosense [FPAP]
154407
154332
-
His
GTG
[ENA]
¡û
>W1710582602
FQUD01000001
Bacteroidota
Chryseobacterium sp. OV279 [FQUD]
140292
140368
+
His
GTG
[ENA]
¡û
>W1710583941
FQVE01000007
Bacteroidota
Chryseobacterium vrystaatense YR203 [FQVE]
147628
147703
+
His
GTG
[ENA]
¡û
>W1710584577
FQVQ01000018
Bacteroidota
Flavobacterium fontis [FQVQ]
9670
9594
-
His
GTG
[ENA]
¡û
>W1710589857
FRAM01000001
Bacteroidota
Epilithonimonas mollis molle [FRAM]
1206227
1206152
-
His
GTG
[ENA]
¡û
>W1710591976
FRCD01000002
Bacteroidota
Chryseobacterium carnipullorum [FRCD]
133659
133734
+
His
GTG
[ENA]
¡û
>W1710598367
FTNY01000004
Bacteroidota
Chryseobacterium shigense [FTNY]
696717
696642
-
His
GTG
[ENA]
¡û
>W1710598427
FTNZ01000005
Bacteroidota
Chryseobacterium joostei [FTNZ]
420817
420742
-
His
GTG
[ENA]
¡û
>W1710599055
FTOL01000002
Bacteroidota
Chryseobacterium ureilyticum [FTOL]
653373
653298
-
His
GTG
[ENA]
¡û
>W1710606028
FWXM01000002
Bacteroidota
Chryseobacterium sp. YR221 [FWXM]
817994
817919
-
His
GTG
[ENA]
¡û
>W1710637271
JRLW01000001
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
317224
317298
+
His
GTG
[ENA]
¡û
>W1710637374
JRLY01000010
Bacteroidota
Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]
1274
1200
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK