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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274988 (22 seq.)
>C171016828
CP012418
Gammaproteobacteria
Kangiella sediminilitoris KCTC 23892 [CP012418]
1315981
1315905
-
Arg
ACG
-
¡û
>W131223242
AUBY01000003
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
368616
368692
+
Arg
ACG
[ENA]
¡û
>W131223245
AUBY01000004
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
2
78
+
Arg
ACG
[ENA]
¡û
>W131223347
AUBZ01000031
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
59243
59167
-
Arg
ACG
[ENA]
¡û
>W131223348
AUBZ01000031
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
59113
59037
-
Arg
ACG
[ENA]
¡û
>W131223349
AUBZ01000031
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
59001
58925
-
Arg
ACG
[ENA]
¡û
>W131223350
AUBZ01000031
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
58875
58799
-
Arg
ACG
[ENA]
¡û
>W131241532
BARX01000047
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
1
77
+
Arg
ACG
[ENA]
¡û
>WENV170025080
BCQL01204827
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
7
83
+
Arg
ACG
[ENA]
¢þ
>WENV170025081
BCQL01204827
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
132
208
+
Arg
ACG
[ENA]
¢þ
>WENV170025083
BCQL01204827
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
358
434
+
Arg
ACG
[ENA]
¢þ
>W09109219
ABUB01000003
Gammaproteobacteria
Kangiella koreensis DSM 16069 [ABUB]
567971
568047
+
Arg
ACG
[ENA]
¡û
>W1910178261
BJEQ01000001
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
334334
334258
-
Arg
ACG
[ENA]
¡û
>C10108028
CP001707
Gammaproteobacteria
Kangiella koreensis DSM 16069 [CP001707]
1529524
1529448
-
Arg
ACG
[Ensembl]
¡û
>W1511586712
LAZL01000009
Gammaproteobacteria
Catenovulum maritimum Q1 [LAZL]
5940
5864
-
Arg
ACG
[ENA]
¡û
>W1511586713
LAZL01000009
Gammaproteobacteria
Catenovulum maritimum Q1 [LAZL]
5841
5765
-
Arg
ACG
[ENA]
¡û
>C161049676
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1303612
1303536
-
Arg
ACG
-
¡û
>C161049677
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1303495
1303419
-
Arg
ACG
-
¡û
>C161049678
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1303364
1303288
-
Arg
ACG
-
¡û
>C161049679
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1303246
1303170
-
Arg
ACG
-
¡û
>C161049681
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1303020
1302944
-
Arg
ACG
-
¡û
>C161049682
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1302889
1302813
-
Arg
ACG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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