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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275005 (27 seq.)
>W1711314416
MAUJ01000011
Gammaproteobacteria
Pseudoalteromonas luteoviolacea [MAUJ]
31537
31613
+
Arg
TCT
[ENA]
¡û
>C171038442
CP015411
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4054249 [CP015411, CP015412]
3971487
3971411
-
Arg
TCT
-
¡û
>C171038569
CP015413
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S40542 [CP015413, CP015414]
3968837
3968761
-
Arg
TCT
-
¡û
>C171038696
CP015415
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4054 [CP015415, CP015416]
3968841
3968765
-
Arg
TCT
-
¡û
>W141086097
AUSV01000002
Gammaproteobacteria
Pseudoalteromonas luteoviolacea 2ta16 [AUSV]
202786
202710
-
Arg
TCT
[ENA]
¡û
>W1511479360
JWIC01000004
Gammaproteobacteria
Pseudoalteromonas luteoviolacea HI1 [JWIC]
580778
580854
+
Arg
TCT
[ENA]
¡û
>W1610025031
AUXS01000075
Gammaproteobacteria
Pseudoalteromonas luteoviolacea NCIMB 1944 [AUXS]
31150
31226
+
Arg
TCT
[ENA]
¡û
>W1610025138
AUXT01000217
Gammaproteobacteria
Pseudoalteromonas luteoviolacea NCIMB 1942 [AUXT]
32322
32398
+
Arg
TCT
[ENA]
¡û
>W1610025168
AUXU01000098
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4047-1 [AUXU]
132752
132676
-
Arg
TCT
[ENA]
¡û
>W1610025281
AUXV01000016
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S2607 [AUXV]
30935
31011
+
Arg
TCT
[ENA]
¡û
>W1610025389
AUXW01000153
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4054 [AUXW]
71166
71090
-
Arg
TCT
[ENA]
¡û
>W1610025420
AUXX01000016
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4060-1 [AUXX]
31127
31203
+
Arg
TCT
[ENA]
¡û
>W1610025566
AUXY01000069
Gammaproteobacteria
Pseudoalteromonas luteoviolacea H33-S [AUXY]
31388
31464
+
Arg
TCT
[ENA]
¡û
>W1610025607
AUXZ01000046
Gammaproteobacteria
Pseudoalteromonas luteoviolacea H33 [AUXZ]
85343
85267
-
Arg
TCT
[ENA]
¡û
>W1610025775
AUYA01000145
Gammaproteobacteria
Pseudoalteromonas luteoviolacea CPMOR-2 [AUYA]
31590
31666
+
Arg
TCT
[ENA]
¡û
>W1610025820
AUYB01000103
Gammaproteobacteria
Pseudoalteromonas luteoviolacea DSM 6061 [AUYB]
31539
31615
+
Arg
TCT
[ENA]
¡û
>W1610025910
AUYC01000015
Gammaproteobacteria
Pseudoalteromonas luteoviolacea CPMOR-1 [AUYC]
31373
31449
+
Arg
TCT
[ENA]
¡û
>W1610527197
JPWZ01000039
Gammaproteobacteria
Pseudoalteromonas luteoviolacea [JPWZ]
89354
89278
-
Arg
TCT
[ENA]
¡û
>W1611059291
MAUJ01000011
Gammaproteobacteria
Pseudoalteromonas luteoviolacea [MAUJ]
31537
31613
+
Arg
TCT
[ENA]
¡û
>W1710021410
AUXU01000098
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4047-1 [AUXU]
132752
132676
-
Arg
TCT
[ENA]
¡û
>W1710021523
AUXV01000016
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S2607 [AUXV]
30935
31011
+
Arg
TCT
[ENA]
¡û
>W1710021631
AUXW01000153
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4054 [AUXW]
71166
71090
-
Arg
TCT
[ENA]
¡û
>W1710021662
AUXX01000016
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4060-1 [AUXX]
31127
31203
+
Arg
TCT
[ENA]
¡û
>W1710021808
AUXY01000069
Gammaproteobacteria
Pseudoalteromonas luteoviolacea H33-S [AUXY]
31388
31464
+
Arg
TCT
[ENA]
¡û
>W1710021849
AUXZ01000046
Gammaproteobacteria
Pseudoalteromonas luteoviolacea H33 [AUXZ]
85343
85267
-
Arg
TCT
[ENA]
¡û
>W1710021958
AUYB01000103
Gammaproteobacteria
Pseudoalteromonas luteoviolacea DSM 6061 [AUYB]
31539
31615
+
Arg
TCT
[ENA]
¡û
>W1710628700
JPWZ01000039
Gammaproteobacteria
Pseudoalteromonas luteoviolacea [JPWZ]
89354
89278
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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