This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27506 (31 seq.)
>W1711421655
MHZH01000304
Gammaproteobacteria
Pseudomonadales bacterium GWC1_66_9 [MHZH]
2797
2886
+
Ser
GGA
[ENA]
¡û
>W131231075
AUIE01000005
Gammaproteobacteria
Pseudomonas resinovorans DSM 21078 [AUIE]
148949
149038
+
Ser
GGA
[ENA]
¡û
>w002040
AAAU03000001
Gammaproteobacteria
Azotobacter vinelandii AvOP [AAAU]
208873
208964
+
Ser
GGA
[ENA]
¡û
>W141076141
ATCP01000001
Gammaproteobacteria
Pseudomonas alcaligenes OT 69 [ATCP]
87288
87199
-
Ser
GGA
[ENA]
¡û
>W141231073
BATO01000014
Gammaproteobacteria
Pseudomonas alcaligenes MRY13-0052 [BATO]
77025
77114
+
Ser
GGA
[ENA]
¡û
>W141319158
JBOY01000010
Gammaproteobacteria
Pseudomonas sp. RL [JBOY]
43012
42923
-
Ser
GGA
[ENA]
¡û
>WENV170706659
LNAP01005262
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
19113
19202
+
Ser
GGA
[ENA]
¢þ
>C181011088
CP011835
Gammaproteobacteria
Azotobacter chroococcum B3 [CP011835]
1995728
1995817
+
Ser
GGA
-
¡û
>W09102078
AAHH01000001
Gammaproteobacteria
Azotobacter vinelandii AvOP [AAHH]
208874
208963
+
Ser
GGA
[ENA]
¡û
>C191092004
CP032616
Gammaproteobacteria
Pseudomonas sp. DY-1 [CP032616]
1786106
1786017
-
Ser
GGA
-
¡û
>C09100888
CP001157
Gammaproteobacteria
Azotobacter vinelandii DJ DJ; ATCC BAA-1303 [CP001157]
2391403
2391492
+
Ser
GGA
[Ensembl]
¡û
>W1810680773
QKRU01000084
Gammaproteobacteria
Pseudomonas sp. 57B-090624 [QKRU]
9197
9286
+
Ser
GGA
[ENA]
¡û
>C151068460
CP010415
Gammaproteobacteria
Azotobacter chroococcum NCIMB 8003 [CP010415]
2530003
2529914
-
Ser
GGA
[Ensembl]
¡û
>W1511356339
JRUD01000006
Gammaproteobacteria
Pseudomonas flexibilis ATCC 29606 [JRUD]
21614
21525
-
Ser
GGA
[ENA]
¡û
>W1511393297
JTAK01000002
Gammaproteobacteria
Pseudomonas flexibilis JCM 14085 [JTAK]
634452
634541
+
Ser
GGA
[ENA]
¡û
>W1610046991
BBCY01000168
Gammaproteobacteria
Pseudomonas flexibilis JCM 14085 [BBCY]
2438
2349
-
Ser
GGA
[ENA]
¡û
>W1610070272
BCTD01000005
Gammaproteobacteria
Azotobacter vinelandii NBRC 13581 [BCTD]
112800
112889
+
Ser
GGA
[ENA]
¡û
>C131014897
CP005094
Gammaproteobacteria
Azotobacter vinelandii CA [CP005094]
2391427
2391516
+
Ser
GGA
[Ensembl]
¡û
>C131014961
CP005095
Gammaproteobacteria
Azotobacter vinelandii CA6 [CP005095]
2391415
2391504
+
Ser
GGA
[Ensembl]
¡û
>W1710043596
BBCY01000168
Gammaproteobacteria
Pseudomonas flexibilis JCM 14085 [BBCY]
2438
2349
-
Ser
GGA
[ENA]
¡û
>W1710067645
BCTD01000005
Gammaproteobacteria
Azotobacter vinelandii NBRC 13581 [BCTD]
112800
112889
+
Ser
GGA
[ENA]
¡û
>W1710084448
BDMA01000014
Gammaproteobacteria
Pseudomonas resinovorans [BDMA]
1015
1104
+
Ser
GGA
[ENA]
¡û
>W1710506521
FMUP01000001
Gammaproteobacteria
Pseudomonas flexibilis [FMUP]
275264
275175
-
Ser
GGA
[ENA]
¡û
>W1710541758
FNYO01000039
Gammaproteobacteria
Azotobacter beijerinckii [FNYO]
35837
35926
+
Ser
GGA
[ENA]
¡û
>W1710541847
FNYQ01000043
Gammaproteobacteria
Azotobacter beijerinckii [FNYQ]
556
467
-
Ser
GGA
[ENA]
¡û
>W1710550522
FOFJ01000001
Gammaproteobacteria
Azotobacter beijerinckii [FOFJ]
87819
87730
-
Ser
GGA
[ENA]
¡û
>W1710556652
FOKJ01000020
Gammaproteobacteria
Azotobacter beijerinckii [FOKJ]
20136
20047
-
Ser
GGA
[ENA]
¡û
>W1710567629
FOSX01000005
Gammaproteobacteria
Azotobacter beijerinckii [FOSX]
36083
36172
+
Ser
GGA
[ENA]
¡û
>W1710573427
FOXM01000003
Gammaproteobacteria
Pseudomonas sagittaria [FOXM]
221452
221541
+
Ser
GGA
[ENA]
¡û
>W1710581976
FPKM01000013
Gammaproteobacteria
Azotobacter vinelandii [FPKM]
1618
1529
-
Ser
GGA
[ENA]
¡û
>W1710595686
FTMC01000009
Gammaproteobacteria
Pseudomonas flexibilis [FTMC]
21927
21838
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK