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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275067 (20 seq.)
>W131166845
ARCU01000003
Gammaproteobacteria
Methylosarcina fibrata AML-C10 [ARCU]
109860
109936
+
Met
CAT
[ENA]
¡û
>W131186702
ARWI01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Kp2 Kp2 [ARWI]
2530713
2530789
+
Met
CAT
[ENA]
¡û
>C171002476
CP009654
Gammaproteobacteria
Francisella frigiditurris CA97-1460 [CP009654]
566393
566469
+
Met
CAT
-
¡û
>C171051169
CP016796
Gammaproteobacteria
Francisella uliginis TX07-7310 [CP016796]
2054994
2054918
-
Met
CAT
-
¡û
>WENV181378491
OFRB01011276
[OFRB] wastewater metagenome; Exp Tend CN 0WW
741
817
+
fMet
CAT
[ENA]
¢þ
>WENV181381884
OFRF01021167
[OFRF] wastewater metagenome; Exp Tend CN 50WW
181
105
-
fMet
CAT
[ENA]
¢þ
>W141137407
AWHF01000039
Gammaproteobacteria
Francisella sp. W12-1067 [AWHF]
132714
132790
+
Met
CAT
[ENA]
¡û
>W141170941
AXZC01000004
Gammaproteobacteria
Thiomicrorhabdus chilensis DSM 12352 [AXZC]
876524
876448
-
Met
CAT
[ENA]
¡û
>W141279848
JAGP01000001
Gammaproteobacteria
Hydrogenovibrio kuenenii DSM 12350 [JAGP]
1487375
1487299
-
Met
CAT
[ENA]
¡û
>C181059140
CP022132
Gammaproteobacteria
Francisella halioticida DSM 23729 [CP022132]
2054367
2054291
-
Met
CAT
-
¡û
>C191180147
CP040602
Gammaproteobacteria
Thiomicrorhabdus sediminis G1 [CP040602]
776145
776221
+
Met
CAT
-
¡û
>W141700065
JMIU01000001
Gammaproteobacteria
Hydrogenovibrio marinus [JMIU]
788003
787927
-
Met
CAT
[ENA]
¡û
>W141733795
JNLD01000003
Gammaproteobacteria
Thiomicrorhabdus sp. Milos-T2 Milos-T2 [JNLD]
1129659
1129583
-
Met
CAT
[ENA]
¡û
>W141777003
JOML01000002
Gammaproteobacteria
Hydrogenovibrio marinus DSM 11271 [JOML]
1146997
1146921
-
Met
CAT
[ENA]
¡û
>W141807538
JPON01000001
Gammaproteobacteria
Methylomarinum vadi [JPON]
387446
387522
+
Met
CAT
[ENA]
¡û
>W141820260
JQMT01000001
Gammaproteobacteria
Hydrogenovibrio sp. Milos-T1 Milos-T1 [JQMT]
724017
724093
+
Met
CAT
[ENA]
¡û
>W1911687817
QLIS01000007
Gammaproteobacteria
Pseudofrancisella aestuarii SYSU WZ-2 [QLIS]
213645
213569
-
Met
CAT
[ENA]
¡û
>C151068602
CP010427
Gammaproteobacteria
Allofrancisella guangzhouensis 08HL01032 [CP010427]
157710
157634
-
Met
CAT
[Ensembl]
¡û
>ENV09001878
ACQI01019978
Hydrothermal vent metagenome LCHCB.C1
620
544
-
Met
CAT
[ENA]
¡û
>ENV09001916
ACQI01026173
Hydrothermal vent metagenome LCHCB.C1
587
511
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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