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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275112 (52 seq.)
>W1711149148
LVLF01000013
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
577947
577871
-
Met
CAT
[ENA]
¡û
>W1711932821
NAIA01000003
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
202202
202126
-
Met
CAT
[ENA]
¡û
>W1712077006
NGUO01000001
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
15247
15171
-
Met
CAT
[ENA]
¡û
>W1712077065
NGUP01000003
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
197088
197012
-
Met
CAT
[ENA]
¡û
>CL00030
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
1762690
1762352
-
Met
CAT
[Ensembl]
¡û
>C171035199
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
1835457
1835381
-
Met
CAT
-
¡û
>C171083812
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
845477
845553
+
Met
CAT
-
¡û
>C171094224
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
782693
782769
+
Met
CAT
-
¡û
>WENV180111673
OAPN01136135
[OAPN] marine metagenome; 2011
259
335
+
Ile2
CAT
[ENA]
¢þ
>WENV180391250
OBPM01060092
[OBPM] marine metagenome; ENVO:00002010
195
271
+
Ile2
CAT
[ENA]
¢þ
>WENV180743240
ODHH01171427
[ODHH] human metagenome; G_DNA_Stool
169
245
+
Ile2
CAT
[ENA]
¢þ
>WENV180851917
ODKV01298491
[ODKV] human metagenome; G_DNA_Stool
96
20
-
Ile2
CAT
[ENA]
¢þ
>WENV180886944
ODME01323100
[ODME] human metagenome; G_DNA_Stool
118
42
-
Ile2
CAT
[ENA]
¢þ
>WENV181111618
OEEK01143006
[OEEK] human metagenome; G_DNA_Stool
154
78
-
Ile2
CAT
[ENA]
¢þ
>WENV181149372
OEHT01059192
[OEHT] human metagenome; G_DNA_Stool
257
333
+
Ile2
CAT
[ENA]
¢þ
>WENV181367438
OFQB01001449
[OFQB] freshwater metagenome; Freshwater Lake
898
822
-
Ile2
CAT
[ENA]
¢þ
>WENV181369895
OFQR01001778
[OFQR] freshwater metagenome; Freshwater Lake
1
77
+
Ile2
CAT
[ENA]
¢þ
>WENV181369905
OFQR01002057
[OFQR] freshwater metagenome; Freshwater Lake
77
1
-
Ile2
CAT
[ENA]
¢þ
>WENV181369990
OFQR01004828
[OFQR] freshwater metagenome; Freshwater Lake
1
77
+
Ile2
CAT
[ENA]
¢þ
>WENV181370519
OFQT01000045
[OFQT] freshwater metagenome; Freshwater Lake
16056
15980
-
Ile2
CAT
[ENA]
¢þ
>WENV181379533
OFRD01002868
[OFRD] wastewater metagenome; Exp Tend CN 100WW
1832
1756
-
Ile2
CAT
[ENA]
¢þ
>WENV181391262
OFRS01000731
[OFRS] freshwater metagenome; Freshwater Lake
736
660
-
Ile2
CAT
[ENA]
¢þ
>WENV181401123
OFSF01059127
[OFSF] wastewater metagenome; Exp Tend VB 100WW
118
42
-
Ile2
CAT
[ENA]
¢þ
>WENV181510304
OGGQ01069136
[OGGQ] metagenome; Human gut stool
100
176
+
Ile2
CAT
[ENA]
¢þ
>WENV181838638
OGVN01006644
[OGVN] freshwater metagenome; freshwater
635
711
+
Ile2
CAT
[ENA]
¢þ
>WENV181883140
OGXI01002024
[OGXI] human gut metagenome; faeces
12565
12641
+
Ile2
CAT
[ENA]
¢þ
>WENV181929180
OGYO01012836
[OGYO] human gut metagenome; faeces
1453
1377
-
Ile2
CAT
[ENA]
¢þ
>WENV181973008
OHAA01007297
[OHAA] human gut metagenome; faeces
1477
1401
-
Ile2
CAT
[ENA]
¢þ
>WENV181992392
OHAQ01049914
[OHAQ] human gut metagenome; faeces
852
776
-
Ile2
CAT
[ENA]
¢þ
>WENV181998257
OHAU01041004
[OHAU] human gut metagenome; faeces
489
413
-
Ile2
CAT
[ENA]
¢þ
>WENV182635820
OJKY01131148
[OJKY] metagenome; faeces
255
331
+
Ile2
CAT
[ENA]
¢þ
>WENV182886105
OKSC01106425
[OKSC] human gut metagenome; faeces
380
456
+
Ile2
CAT
[ENA]
¢þ
>WENV183086685
OLJF01073036
[OLJF] metagenome; faeces
523
599
+
Ile2
CAT
[ENA]
¢þ
>WENV183131336
OLOA01029810
[OLOA] human gut metagenome; faeces
1126
1202
+
Ile2
CAT
[ENA]
¢þ
>WENV183575759
OOCI01007242
[OOCI] human gut metagenome; human gut
3065
2989
-
Ile2
CAT
[ENA]
¢þ
>WENV170069071
CDZP01030525
[CDZP] gut metagenome; human stools
629
705
+
Met
CAT
[ENA]
¢þ
>WENV170070110
CDZQ01014587
[CDZQ] gut metagenome; human stools
11164
11240
+
Met
CAT
[ENA]
¢þ
>WENV170624542
FUWD013182937
[FUWD] metagenome; unknown
335
411
+
Met
CAT
[ENA]
¢þ
>WENV170632830
FUWD013387605
[FUWD] metagenome; unknown
335
411
+
Met
CAT
[ENA]
¢þ
>C181187683
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
1258454
1258378
-
Met
CAT
-
¡û
>C181218925
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
1165562
1165486
-
Met
CAT
-
¡û
>C181218995
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
1155739
1155663
-
Met
CAT
-
¡û
>C181219009
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
400987
401063
+
Met
CAT
-
¡û
>W09119215
ACDP01000043
Betaproteobacteria
Oxalobacter paraformigenes HOxBLS [ACDP]
71232
71156
-
Met
CAT
[ENA]
¡û
>W09119256
ACDQ01000011
Betaproteobacteria
Oxalobacter formigenes OXCC13 [ACDQ]
237791
237715
-
Met
CAT
[ENA]
¡û
>WENV025539
AACY020895457
Marine microbial communities from Global Ocean Sampling (GOS)
649
727
+
Met
CAT
[ENA]
>W1910888846
NESE01000001
Betaproteobacteria
Limnohabitans sp. Hippo4 [NESE]
1053951
1053875
-
Met
CAT
[ENA]
¡û
>C151025662
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
1644787
1644711
-
Met
CAT
[Ensembl]
¡û
>W1510720079
CXOM01000007
Betaproteobacteria
Limnohabitans sp. Rim11 [CXOM]
65138
65214
+
Met
CAT
[ENA]
¡û
>WENV057622
AACY023300458
Marine microbial communities from Global Ocean Sampling (GOS)
123
199
+
Met
CAT
[ENA]
>WENV057696
AACY023303308
Marine microbial communities from Global Ocean Sampling (GOS)
438
514
+
Met
CAT
[ENA]
>WENV058318
AACY023324670
Marine microbial communities from Global Ocean Sampling (GOS)
779
855
+
Met
CAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK