This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275113 (17 seq.)
>W1711413756
MGWU01000037
Betaproteobacteria
Gallionellales bacterium RBG_16_56_9 [MGWU]
4212
4136
-
Asp
GTC
[ENA]
¡û
>C171083817
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
956741
956817
+
Asp
GTC
-
¡û
>C171094229
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
893970
894046
+
Asp
GTC
-
¡û
>WENV180851282
ODKV01044724
[ODKV] human metagenome; G_DNA_Stool
64
140
+
Asp
GTC
[ENA]
¢þ
>WENV181663678
OGOH01060773
[OGOH] human gut metagenome; faeces
379
455
+
Asp
GTC
[ENA]
¢þ
>WENV181883532
OGXI01006167
[OGXI] human gut metagenome; faeces
5021
4945
-
Asp
GTC
[ENA]
¢þ
>WENV181915999
OGYF01034033
[OGYF] human gut metagenome; faeces
1249
1173
-
Asp
GTC
[ENA]
¢þ
>WENV182006105
OHBE01076392
[OHBE] human gut metagenome; faeces
44
120
+
Asp
GTC
[ENA]
¢þ
>WENV183086401
OLJF01037529
[OLJF] metagenome; faeces
1149
1225
+
Asp
GTC
[ENA]
¢þ
>WENV183331293
OLWB01091597
[OLWB] human gut metagenome; faeces
233
309
+
Asp
GTC
[ENA]
¢þ
>WENV183421508
OMBB01032434
[OMBB] human gut metagenome; feces
544
468
-
Asp
GTC
[ENA]
¢þ
>WENV170069214
CDZP01035242
[CDZP] gut metagenome; human stools
78
2
-
Asp
GTC
[ENA]
¢þ
>WENV170071221
CDZQ01049333
[CDZQ] gut metagenome; human stools
16800
16724
-
Asp
GTC
[ENA]
¢þ
>WENV170991197
MWWA01132711
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
14
90
+
Asp
GTC
[ENA]
¢þ
>W09119204
ACDP01000042
Betaproteobacteria
Oxalobacter paraformigenes HOxBLS [ACDP]
64765
64689
-
Asp
GTC
[ENA]
¡û
>W09119261
ACDQ01000011
Betaproteobacteria
Oxalobacter formigenes OXCC13 [ACDQ]
126514
126438
-
Asp
GTC
[ENA]
¡û
>WENV037311
AACY021848013
Marine microbial communities from Global Ocean Sampling (GOS)
816
740
-
Asp
GTC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK