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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275177 (132 seq.)
>W1711228158
LXWI01000051
Campylobacterota
Helicobacter pullorum [LXWI]
13321
13397
+
Ile
GAT
[ENA]
¡û
>W1711302759
MAJF01000012
Campylobacterota
Helicobacter pullorum [MAJF]
2819
2743
-
Ile
GAT
[ENA]
¡û
>W1711302819
MAJG01000058
Campylobacterota
Helicobacter pullorum [MAJG]
1609
1685
+
Ile
GAT
[ENA]
¡û
>W1711305352
MAMQ01000033
Campylobacterota
Helicobacter sp. CLO-3 [MAMQ]
6243
6319
+
Ile
GAT
[ENA]
¡û
>W1711306349
MANJ01000059
Campylobacterota
Helicobacter pullorum [MANJ]
3303
3227
-
Ile
GAT
[ENA]
¡û
>W1711306379
MANK01000028
Campylobacterota
Helicobacter pullorum [MANK]
3303
3227
-
Ile
GAT
[ENA]
¡û
>W1711307565
MAOZ01000057
Campylobacterota
Helicobacter pullorum [MAOZ]
3384
3308
-
Ile
GAT
[ENA]
¡û
>W1711307592
MAPA01000048
Campylobacterota
Helicobacter pullorum [MAPA]
683
759
+
Ile
GAT
[ENA]
¡û
>W1711307636
MAPB01000086
Campylobacterota
Helicobacter pullorum [MAPB]
607
683
+
Ile
GAT
[ENA]
¡û
>W1711307638
MAPB01000107
Campylobacterota
Helicobacter pullorum [MAPB]
834
758
-
Ile
GAT
[ENA]
¡û
>W1711307642
MAPC01000007
Campylobacterota
Helicobacter pullorum [MAPC]
1354
1430
+
Ile
GAT
[ENA]
¡û
>W1711307679
MAPD01000013
Campylobacterota
Helicobacter pullorum [MAPD]
19713
19789
+
Ile
GAT
[ENA]
¡û
>W1711307735
MAPE01000040
Campylobacterota
Helicobacter pullorum [MAPE]
14096
14172
+
Ile
GAT
[ENA]
¡û
>C171097680
CP019645
Campylobacterota
Helicobacter bilis AAQJH [CP019645]
1104459
1104535
+
Ile
GAT
-
¡û
>C171097689
CP019645
Campylobacterota
Helicobacter bilis AAQJH [CP019645]
2382491
2382567
+
Ile
GAT
-
¡û
>W131145094
AQFW01000010
Campylobacterota
Helicobacter bilis WiWa [AQFW]
14420
14496
+
Ile
GAT
[ENA]
¡û
>W131145096
AQFW01000014
Campylobacterota
Helicobacter bilis WiWa [AQFW]
2769
2845
+
Ile
GAT
[ENA]
¡û
>W131145099
AQFW01000016
Campylobacterota
Helicobacter bilis WiWa [AQFW]
125085
125009
-
Ile
GAT
[ENA]
¡û
>W131241816
BASD01000003
Campylobacterota
Helicobacter fennelliae MRY12-0050 [BASD]
18835
18759
-
Ile
GAT
[ENA]
¡û
>C010566
AE017125
Campylobacterota
Helicobacter hepaticus ATCC 51449 [AE017125]
956712
956636
-
Ile
GAT
[Ensembl]
¡û
>WENV180120293
OASL01023382
[OASL] human gut metagenome; ENVO:feces
177
253
+
Ile
GAT
[ENA]
¢þ
>WENV181196885
OEQZ01000377
[OEQZ] metagenome; Caecal content
587
663
+
Ile
GAT
[ENA]
¢þ
>WENV181199150
OERG01001818
[OERG] metagenome; Caecal content
2970
2894
-
Ile
GAT
[ENA]
¢þ
>WENV181203525
OERW01000559
[OERW] metagenome; Caecal content
3711
3635
-
Ile
GAT
[ENA]
¢þ
>WENV181205061
OESA01001811
[OESA] metagenome; Caecal content
2868
2792
-
Ile
GAT
[ENA]
¢þ
>W08010308
ABQS01000108
Campylobacterota
Helicobacter canadensis MIT 98-5491 [ABQS]
1915
1991
+
Ile
GAT
[ENA]
¡û
>W08010378
ABQU01000097
Campylobacterota
Helicobacter pullorum MIT 98-5489 [ABQU]
3700
3627
-
Ile
GAT
[ENA]
¡û
>WENV181537804
OGHX01002289
[OGHX] metagenome; Human gut stool
177
253
+
Ile
GAT
[ENA]
¢þ
>WENV183073698
OLIU01000535
[OLIU] human gut metagenome; stool sample
1150
1226
+
Ile
GAT
[ENA]
¢þ
>WENV170636507
JFBN01301379
[JFBN] chicken gut metagenome; ceca of Broiler chicken
3534
3458
-
Ile
GAT
[ENA]
¢þ
>C181054480
CP021886
Campylobacterota
Helicobacter apodemus SCJK1 [CP021886]
1466288
1466364
+
Ile
GAT
-
¡û
>C181054499
CP021886
Campylobacterota
Helicobacter apodemus SCJK1 [CP021886]
949753
949677
-
Ile
GAT
-
¡û
>C191213235
LR134509
Campylobacterota
Helicobacter pullorum NCTC13154 [LR134509]
76461
76537
+
Ile
GAT
-
¡û
>C191213237
LR134509
Campylobacterota
Helicobacter pullorum NCTC13154 [LR134509]
284014
284090
+
Ile
GAT
-
¡û
>C191213737
LR134518
Campylobacterota
Helicobacter cholecystus NCTC13205 [LR134518]
843148
843072
-
Ile
GAT
-
¡û
>C191213744
LR134518
Campylobacterota
Helicobacter cholecystus NCTC13205 [LR134518]
710108
710032
-
Ile
GAT
-
¡û
>W141558691
JHWC01000029
Campylobacterota
Helicobacter rodentium ATCC 700285 [JHWC]
954
1030
+
Ile
GAT
[ENA]
¡û
>W09119132
ACDN01000023
Campylobacterota
Helicobacter bilis ATCC 43879 [ACDN]
2593
2669
+
Ile
GAT
[ENA]
¡û
>W09119172
ACDO01000013
Campylobacterota
Helicobacter winghamensis ATCC BAA-430 [ACDO]
2359
2435
+
Ile
GAT
[ENA]
¡û
>W09134332
ACSF01000002
Campylobacterota
Helicobacter canadensis MIT 98-5491(ACSF) [ACSF]
222008
222084
+
Ile
GAT
[ENA]
¡û
>W09134338
ACSF01000002
Campylobacterota
Helicobacter canadensis MIT 98-5491(ACSF) [ACSF]
1173094
1173018
-
Ile
GAT
[ENA]
¡û
>W09134357
ACSF01000004
Campylobacterota
Helicobacter canadensis MIT 98-5491(ACSF) [ACSF]
99837
99761
-
Ile
GAT
[ENA]
¡û
>W141701704
JMKW01000042
Campylobacterota
Helicobacter bilis ATCC 51630 [JMKW]
14744
14820
+
Ile
GAT
[ENA]
¡û
>W141701706
JMKW01000053
Campylobacterota
Helicobacter bilis ATCC 51630 [JMKW]
8940
9016
+
Ile
GAT
[ENA]
¡û
>W141701711
JMKW01000060
Campylobacterota
Helicobacter bilis ATCC 51630 [JMKW]
9263
9187
-
Ile
GAT
[ENA]
¡û
>W1910546227
FZML01000013
Campylobacterota
Helicobacter muridarum [FZML]
9179
9255
+
Ile
GAT
[ENA]
¡û
>W1910546263
FZMM01000006
Campylobacterota
Helicobacter muridarum [FZMM]
9150
9226
+
Ile
GAT
[ENA]
¡û
>W1910546305
FZMN01000015
Campylobacterota
Helicobacter muridarum [FZMN]
2459
2535
+
Ile
GAT
[ENA]
¡û
>W1910546490
FZMS01000020
Campylobacterota
Helicobacter bilis [FZMS]
23833
23757
-
Ile
GAT
[ENA]
¡û
>W1910546537
FZMT01000038
Campylobacterota
Helicobacter bilis [FZMT]
1528
1604
+
Ile
GAT
[ENA]
¡û
>W1910546609
FZMV01000019
Campylobacterota
Helicobacter pullorum [FZMV]
71174
71098
-
Ile
GAT
[ENA]
¡û
>W1910546657
FZMX01000005
Campylobacterota
Helicobacter pullorum [FZMX]
136956
137032
+
Ile
GAT
[ENA]
¡û
>W1910546797
FZND01000051
Campylobacterota
Helicobacter trogontum [FZND]
25539
25463
-
Ile
GAT
[ENA]
¡û
>W1910546838
FZNE01000008
Campylobacterota
Helicobacter cholecystus [FZNE]
27863
27787
-
Ile
GAT
[ENA]
¡û
>W1910546876
FZNF01000077
Campylobacterota
Helicobacter trogontum [FZNF]
5451
5375
-
Ile
GAT
[ENA]
¡û
>W1910546886
FZNG01000015
Campylobacterota
Helicobacter trogontum [FZNG]
4823
4747
-
Ile
GAT
[ENA]
¡û
>W1910549603
FZPK01000003
Campylobacterota
Helicobacter rappini [FZPK]
114665
114741
+
Ile
GAT
[ENA]
¡û
>W1910549676
FZPM01000019
Campylobacterota
Helicobacter aurati [FZPM]
48294
48218
-
Ile
GAT
[ENA]
¡û
>W1910549719
FZPN01000008
Campylobacterota
Helicobacter canadensis [FZPN]
3991
3915
-
Ile
GAT
[ENA]
¡û
>W1910549761
FZPO01000054
Campylobacterota
Helicobacter equorum [FZPO]
5945
5869
-
Ile
GAT
[ENA]
¡û
>W1910549804
FZPP01000053
Campylobacterota
Helicobacter marmotae [FZPP]
2417
2493
+
Ile
GAT
[ENA]
¡û
>W1910584309
JXTW01000021
Campylobacterota
Helicobacter anseris 2013ZJHSD2 [JXTW]
2352
2428
+
Ile
GAT
[ENA]
¡û
>W1910584345
JXTX01000019
Campylobacterota
Helicobacter pullorum 2013BJHL [JXTX]
719
795
+
Ile
GAT
[ENA]
¡û
>W1910663804
MBPH01000014
Campylobacterota
Helicobacter winghamensis 196_13 [MBPH]
4043
3967
-
Ile
GAT
[ENA]
¡û
>W1910663840
MBPI01000012
Campylobacterota
Helicobacter winghamensis 228_13 [MBPI]
2359
2435
+
Ile
GAT
[ENA]
¡û
>W1910663875
MBPJ01000016
Campylobacterota
Helicobacter winghamensis 294_13 [MBPJ]
4098
4022
-
Ile
GAT
[ENA]
¡û
>W1910663910
MBPK01000016
Campylobacterota
Helicobacter winghamensis 295_13 [MBPK]
4043
3967
-
Ile
GAT
[ENA]
¡û
>W1910663946
MBPL01000019
Campylobacterota
Helicobacter winghamensis 296_13 [MBPL]
4043
3967
-
Ile
GAT
[ENA]
¡û
>W1910852921
NBIU01000048
Campylobacterota
Helicobacter valdiviensis WBE14 [NBIU]
2382
2458
+
Ile
GAT
[ENA]
¡û
>W1910889336
NESU01000003
Campylobacterota
Helicobacter sp. TUL [NESU]
126359
126435
+
Ile
GAT
[ENA]
¡û
>W1910914922
NHYK01000003
Campylobacterota
Helicobacter sp. 10-6591 [NHYK]
117746
117822
+
Ile
GAT
[ENA]
¡û
>W1910914984
NHYL01000017
Campylobacterota
Helicobacter sp. 11-8110 [NHYL]
3948
3872
-
Ile
GAT
[ENA]
¡û
>W1910914992
NHYM01000002
Campylobacterota
Helicobacter sp. 16-1353 [NHYM]
54064
53988
-
Ile
GAT
[ENA]
¡û
>W1910915054
NHYN01000037
Campylobacterota
Helicobacter sp. 15-1451 [NHYN]
1849
1925
+
Ile
GAT
[ENA]
¡û
>W1911770868
QXJG01000037
Campylobacterota
Helicobacter burdigaliensis CNRCH 2005/566H [QXJG]
2196
2272
+
Ile
GAT
[ENA]
¡û
>W1810046387
NXLL01000051
Campylobacterota
Helicobacter sp. MIT 00-7814 [NXLL]
4243
4167
-
Ile
GAT
[ENA]
¡û
>W1810046422
NXLM01000044
Campylobacterota
Helicobacter sp. MIT 99-10781 [NXLM]
4243
4167
-
Ile
GAT
[ENA]
¡û
>W1810046486
NXLO01000003
Campylobacterota
Helicobacter sp. MIT 99-5507 [NXLO]
77557
77481
-
Ile
GAT
[ENA]
¡û
>W1810046540
NXLP01000081
Campylobacterota
Helicobacter sp. MIT 14-3879 [NXLP]
1790
1866
+
Ile
GAT
[ENA]
¡û
>W1810046561
NXLQ01000011
Campylobacterota
Helicobacter didelphidarum MIT 17-337 [NXLQ]
59235
59311
+
Ile
GAT
[ENA]
¡û
>W1810046610
NXLR01000030
Campylobacterota
Helicobacter marmotae MIT 98-6070 [NXLR]
2417
2493
+
Ile
GAT
[ENA]
¡û
>W1810046646
NXLS01000025
Campylobacterota
Helicobacter ganmani MIT 99-5101 [NXLS]
594
518
-
Ile
GAT
[ENA]
¡û
>W1810046681
NXLT01000016
Campylobacterota
Helicobacter equorum MIT 12-6600 [NXLT]
2181
2257
+
Ile
GAT
[ENA]
¡û
>W1810046715
NXLU01000014
Campylobacterota
Helicobacter cholecystus ATCC 700242 [NXLU]
2389
2465
+
Ile
GAT
[ENA]
¡û
>W1810046785
NXLW01000026
Campylobacterota
Helicobacter aurati MIT 97-5075 [NXLW]
4604
4528
-
Ile
GAT
[ENA]
¡û
>W1511350725
JRMP01000139
Campylobacterota
Helicobacter saguini MIT 97-6194 [JRMP]
1682
1606
-
Ile
GAT
[ENA]
¡û
>W1511350857
JRMS01000038
Campylobacterota
Helicobacter sp. MIT 03-1614 [JRMS]
12648
12572
-
Ile
GAT
[ENA]
¡û
>W1511353122
JROY01000065
Campylobacterota
Helicobacter sp. MIT 03-1616 [JROY]
4209
4133
-
Ile
GAT
[ENA]
¡û
>W1511353162
JROZ01000016
Campylobacterota
Helicobacter sp. MIT 05-5293 [JROZ]
3573
3497
-
Ile
GAT
[ENA]
¡û
>W1511353206
JRPB01000001
Campylobacterota
Helicobacter sp. MIT 11-5569 [JRPB]
460405
460329
-
Ile
GAT
[ENA]
¡û
>W1511353208
JRPB01000001
Campylobacterota
Helicobacter sp. MIT 11-5569 [JRPB]
298929
298853
-
Ile
GAT
[ENA]
¡û
>W1511353235
JRPB01000015
Campylobacterota
Helicobacter sp. MIT 11-5569 [JRPB]
15041
14965
-
Ile
GAT
[ENA]
¡û
>W1511353270
JRPC01000143
Campylobacterota
Helicobacter apodemus MIT-03-7007 [JRPC]
2672
2748
+
Ile
GAT
[ENA]
¡û
>W1511353315
JRPD01000012
Campylobacterota
Helicobacter muridarum ST1 [JRPD]
5919
5995
+
Ile
GAT
[ENA]
¡û
>W1511353355
JRPF01000001
Campylobacterota
Helicobacter typhlonius MIT 98-6810 [JRPF]
147014
147090
+
Ile
GAT
[ENA]
¡û
>W1511353361
JRPF01000001
Campylobacterota
Helicobacter typhlonius MIT 98-6810 [JRPF]
140239
140163
-
Ile
GAT
[ENA]
¡û
>W1511353386
JRPF01000009
Campylobacterota
Helicobacter typhlonius MIT 98-6810 [JRPF]
2305
2381
+
Ile
GAT
[ENA]
¡û
>W1511353406
JRPG01000018
Campylobacterota
Helicobacter bilis ATCC 51630 [JRPG]
5065
4989
-
Ile
GAT
[ENA]
¡û
>W1511353450
JRPH01000088
Campylobacterota
Helicobacter bilis Missouri [JRPH]
1624
1700
+
Ile
GAT
[ENA]
¡û
>W1511353466
JRPI01000001
Campylobacterota
Helicobacter bilis ATCC 49314 [JRPI]
574760
574684
-
Ile
GAT
[ENA]
¡û
>W1511353489
JRPI01000007
Campylobacterota
Helicobacter bilis ATCC 49314 [JRPI]
2742
2818
+
Ile
GAT
[ENA]
¡û
>W1511353519
JRPJ01000002
Campylobacterota
Helicobacter bilis ATCC 49320 [JRPJ]
1034048
1033972
-
Ile
GAT
[ENA]
¡û
>W1511353526
JRPJ01000003
Campylobacterota
Helicobacter bilis ATCC 49320 [JRPJ]
4928
4852
-
Ile
GAT
[ENA]
¡û
>W1511353552
JRPK01000094
Campylobacterota
Helicobacter trogontum ATCC 49310 [JRPK]
5558
5482
-
Ile
GAT
[ENA]
¡û
>W1511353575
JRPL01000001
Campylobacterota
Helicobacter trogontum ATCC 700114 [JRPL]
1774233
1774157
-
Ile
GAT
[ENA]
¡û
>W1511353596
JRPL01000013
Campylobacterota
Helicobacter trogontum ATCC 700114 [JRPL]
4823
4747
-
Ile
GAT
[ENA]
¡û
>W1511353860
JRPR01000090
Campylobacterota
Helicobacter jaachi MIT 09-6949 [JRPR]
115
39
-
Ile
GAT
[ENA]
¡û
>C161081170
CP014991
Campylobacterota
Helicobacter himalayensis YS1 [CP014991]
39759
39835
+
Ile
GAT
-
¡û
>C161081193
CP014991
Campylobacterota
Helicobacter himalayensis YS1 [CP014991]
953922
953846
-
Ile
GAT
-
¡û
>C161108034
LN907858
Campylobacterota
Helicobacter typhlonius [LN907858]
172563
172639
+
Ile
GAT
[Ensembl]
¡û
>C161108038
LN907858
Campylobacterota
Helicobacter typhlonius [LN907858]
585728
585804
+
Ile
GAT
[Ensembl]
¡û
>W1610522085
JNOA01000075
Campylobacterota
Helicobacter pullorum [JNOA]
3730
3654
-
Ile
GAT
[ENA]
¡û
>W1610522107
JNOB01000021
Campylobacterota
Helicobacter pullorum [JNOB]
14029
14105
+
Ile
GAT
[ENA]
¡û
>W1610522155
JNOC01000083
Campylobacterota
Helicobacter pullorum [JNOC]
2938
2862
-
Ile
GAT
[ENA]
¡û
>W1610522241
JNUR01000044
Campylobacterota
Helicobacter pullorum [JNUR]
12554
12478
-
Ile
GAT
[ENA]
¡û
>W1611012075
LXWI01000051
Campylobacterota
Helicobacter pullorum [LXWI]
13321
13397
+
Ile
GAT
[ENA]
¡û
>W1611053084
MAJF01000012
Campylobacterota
Helicobacter pullorum [MAJF]
2819
2743
-
Ile
GAT
[ENA]
¡û
>W1611053144
MAJG01000058
Campylobacterota
Helicobacter pullorum [MAJG]
1609
1685
+
Ile
GAT
[ENA]
¡û
>W1611054819
MAMQ01000033
Campylobacterota
Helicobacter sp. CLO-3 [MAMQ]
6243
6319
+
Ile
GAT
[ENA]
¡û
>W1611055703
MANJ01000059
Campylobacterota
Helicobacter pullorum [MANJ]
3303
3227
-
Ile
GAT
[ENA]
¡û
>W1611055733
MANK01000028
Campylobacterota
Helicobacter pullorum [MANK]
3303
3227
-
Ile
GAT
[ENA]
¡û
>W1611055848
MAOZ01000057
Campylobacterota
Helicobacter pullorum [MAOZ]
3384
3308
-
Ile
GAT
[ENA]
¡û
>W1611055875
MAPA01000048
Campylobacterota
Helicobacter pullorum [MAPA]
683
759
+
Ile
GAT
[ENA]
¡û
>W1611055919
MAPB01000086
Campylobacterota
Helicobacter pullorum [MAPB]
607
683
+
Ile
GAT
[ENA]
¡û
>W1611055921
MAPB01000107
Campylobacterota
Helicobacter pullorum [MAPB]
834
758
-
Ile
GAT
[ENA]
¡û
>W1611055925
MAPC01000007
Campylobacterota
Helicobacter pullorum [MAPC]
1354
1430
+
Ile
GAT
[ENA]
¡û
>W1611055962
MAPD01000013
Campylobacterota
Helicobacter pullorum [MAPD]
19713
19789
+
Ile
GAT
[ENA]
¡û
>W1611056018
MAPE01000040
Campylobacterota
Helicobacter pullorum [MAPE]
14096
14172
+
Ile
GAT
[ENA]
¡û
>W1710622011
JNOA01000075
Campylobacterota
Helicobacter pullorum [JNOA]
3730
3654
-
Ile
GAT
[ENA]
¡û
>W1710622033
JNOB01000021
Campylobacterota
Helicobacter pullorum [JNOB]
14029
14105
+
Ile
GAT
[ENA]
¡û
>W1710622081
JNOC01000083
Campylobacterota
Helicobacter pullorum [JNOC]
2938
2862
-
Ile
GAT
[ENA]
¡û
>W1710622167
JNUR01000044
Campylobacterota
Helicobacter pullorum [JNUR]
12554
12478
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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