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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275201 (55 seq.)
>W1710853393
LLWQ01000007
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
6618
6542
-
Met
CAT
[ENA]
¡û
>W1710853394
LLWQ01000011
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
48599
48523
-
Met
CAT
[ENA]
¡û
>W1710853410
LLWQ01000158
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
6954
6878
-
Met
CAT
[ENA]
¡û
>W1710889744
LNBC01000013
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
1694
1770
+
Met
CAT
[ENA]
¡û
>W1710889752
LNBC01000017
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
1694
1770
+
Met
CAT
[ENA]
¡û
>W1710889753
LNBC01000022
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
1694
1770
+
Met
CAT
[ENA]
¡û
>W1710889764
LNBC01000041
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
77
1
-
Met
CAT
[ENA]
¡û
>PL171001792
LN832562
Alphaproteobacteria
Paracoccus aminovorans plasmid:IV
730571
730495
-
Met
CAT
[ENA]
¡û
>W131158912
AQUO01000001
Alphaproteobacteria
Paracoccus sp. N5 [AQUO]
1302030
1301954
-
Met
CAT
[ENA]
¡û
>W131158928
AQUO01000002
Alphaproteobacteria
Paracoccus sp. N5 [AQUO]
132996
132920
-
Met
CAT
[ENA]
¡û
>C171107663
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
1643754
1643830
+
Met
CAT
-
¡û
>C171107667
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
2294563
2294639
+
Met
CAT
-
¡û
>C171107672
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
2775343
2775419
+
Met
CAT
-
¡û
>C171110790
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
578290
578214
-
Met
CAT
-
¡û
>W141216646
AZVA01000038
Alphaproteobacteria
Paracoccus sp. J55 [AZVA]
209
285
+
Met
CAT
[ENA]
¡û
>W141216651
AZVA01000063
Alphaproteobacteria
Paracoccus sp. J55 [AZVA]
19
95
+
Met
CAT
[ENA]
¡û
>W141277376
JAEN01000031
Alphaproteobacteria
Paracoccus sp. J39 [JAEN]
157
233
+
Met
CAT
[ENA]
¡û
>W141277378
JAEN01000043
Alphaproteobacteria
Paracoccus sp. J39 [JAEN]
8215
8139
-
Met
CAT
[ENA]
¡û
>W141277381
JAEN01000049
Alphaproteobacteria
Paracoccus sp. J39 [JAEN]
77
1
-
Met
CAT
[ENA]
¡û
>WENV183726115
PJQF01087018
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
212
288
+
fMet
CAT
[ENA]
¢þ
>WENV170564870
CZPY01000013
[CZPY] metagenome; PAHs-polluted Soil
1694
1770
+
Met
CAT
[ENA]
¢þ
>WENV170564878
CZPY01000017
[CZPY] metagenome; PAHs-polluted Soil
1694
1770
+
Met
CAT
[ENA]
¢þ
>WENV170564879
CZPY01000022
[CZPY] metagenome; PAHs-polluted Soil
1694
1770
+
Met
CAT
[ENA]
¢þ
>WENV170564890
CZPY01000041
[CZPY] metagenome; PAHs-polluted Soil
77
1
-
Met
CAT
[ENA]
¢þ
>C181099775
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
1209133
1209209
+
Met
CAT
-
¡û
>C181099779
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
1860253
1860329
+
Met
CAT
-
¡û
>C181099784
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
2283602
2283678
+
Met
CAT
-
¡û
>C181190824
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
1634397
1634473
+
Met
CAT
-
¡û
>C181190828
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
2279747
2279823
+
Met
CAT
-
¡û
>C181190833
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
2755862
2755938
+
Met
CAT
-
¡û
>C191073566
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
431417
431493
+
Met
CAT
-
¡û
>C191073572
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
922585
922661
+
Met
CAT
-
¡û
>C191073588
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
3064437
3064513
+
Met
CAT
-
¡û
>W1911245341
NSJZ01000014
Alphaproteobacteria
Paracoccus salipaludis WN007 [NSJZ]
81622
81546
-
Met
CAT
[ENA]
¡û
>W1911245344
NSJZ01000018
Alphaproteobacteria
Paracoccus salipaludis WN007 [NSJZ]
173
249
+
Met
CAT
[ENA]
¡û
>W1911245349
NSJZ01000046
Alphaproteobacteria
Paracoccus salipaludis WN007 [NSJZ]
3350
3274
-
Met
CAT
[ENA]
¡û
>W1911397933
NWMQ01000087
Alphaproteobacteria
Paracoccus sp. SY [NWMQ]
5404
5480
+
Met
CAT
[ENA]
¡û
>W1810684509
QKYL01000202
Alphaproteobacteria
Paracoccus saliphilus CCTCC AB 2016131 [QKYL]
77
1
-
Met
CAT
[ENA]
¡û
>W1810759499
QPJL01000028
Alphaproteobacteria
Paracoccus lutimaris CECT 8525 [QPJL]
42525
42449
-
Met
CAT
[ENA]
¡û
>C11117034
CP002897
Alphaproteobacteria
Paracoccus denitrificans [CP002897]
775559
775635
+
Met
CAT
[Ensembl]
¡û
>W1511348700
JRKQ01000066
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
81
157
+
Met
CAT
[ENA]
¡û
>W121059998
AJFB01000032
Alphaproteobacteria
Paracoccus denitrificans SD1 [AJFB]
1921
1997
+
Met
CAT
[ENA]
¡û
>W1610716517
LLWQ01000007
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
6618
6542
-
Met
CAT
[ENA]
¡û
>W1610716518
LLWQ01000011
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
48599
48523
-
Met
CAT
[ENA]
¡û
>W1610716534
LLWQ01000158
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
6954
6878
-
Met
CAT
[ENA]
¡û
>W1610750122
LNBC01000013
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
1694
1770
+
Met
CAT
[ENA]
¡û
>W1610750130
LNBC01000017
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
1694
1770
+
Met
CAT
[ENA]
¡û
>W1610750131
LNBC01000022
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
1694
1770
+
Met
CAT
[ENA]
¡û
>W1610750142
LNBC01000041
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
77
1
-
Met
CAT
[ENA]
¡û
>W1710521154
FNGE01000001
Alphaproteobacteria
Paracoccus chinensis [FNGE]
406688
406612
-
Met
CAT
[ENA]
¡û
>W1710521157
FNGE01000002
Alphaproteobacteria
Paracoccus chinensis [FNGE]
262
338
+
Met
CAT
[ENA]
¡û
>W1710521193
FNGE01000022
Alphaproteobacteria
Paracoccus chinensis [FNGE]
33134
33058
-
Met
CAT
[ENA]
¡û
>W1710521199
FNGE01000043
Alphaproteobacteria
Paracoccus chinensis [FNGE]
77
1
-
Met
CAT
[ENA]
¡û
>W1710540972
FNXG01000014
Alphaproteobacteria
Paracoccus alkenifer [FNXG]
3891
3815
-
Met
CAT
[ENA]
¡û
>W1710563615
FOPU01000090
Alphaproteobacteria
Paracoccus aminovorans [FOPU]
1297
1221
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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