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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275202 (32 seq.)
>W1710853400
LLWQ01000099
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
40943
40867
-
Pro
TGG
[ENA]
¡û
>W1710889737
LNBC01000009
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
20190
20114
-
Pro
TGG
[ENA]
¡û
>W1712104735
NIPZ01000002
Alphaproteobacteria
Paracoccus yeei [NIPZ]
11066
11142
+
Pro
TGG
[ENA]
¡û
>C171107669
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
2609257
2609333
+
Pro
TGG
-
¡û
>W141216615
AZVA01000003
Alphaproteobacteria
Paracoccus sp. J55 [AZVA]
254564
254640
+
Pro
TGG
[ENA]
¡û
>W141277307
JAEM01000012
Alphaproteobacteria
Paracoccus pantotrophus J46 [JAEM]
23711
23787
+
Pro
TGG
[ENA]
¡û
>W141277375
JAEN01000023
Alphaproteobacteria
Paracoccus sp. J39 [JAEN]
57399
57475
+
Pro
TGG
[ENA]
¡û
>W141279586
JAGK01000027
Alphaproteobacteria
Paracoccus pantotrophus J40 [JAGK]
23711
23787
+
Pro
TGG
[ENA]
¡û
>WENV170564863
CZPY01000009
[CZPY] metagenome; PAHs-polluted Soil
20190
20114
-
Pro
TGG
[ENA]
¢þ
>C181099781
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
2080675
2080751
+
Pro
TGG
-
¡û
>C181117201
CP025430
Alphaproteobacteria
Paracoccus zhejiangensis J6 [CP025430]
1312542
1312466
-
Pro
TGG
-
¡û
>C181203411
LN832559
Alphaproteobacteria
Paracoccus aminovorans [LN832559]
2360445
2360369
-
Pro
TGG
-
¡û
>C191073569
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
723619
723695
+
Pro
TGG
-
¡û
>W141558857
JHWH01000002
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
267928
267852
-
Pro
TGG
[ENA]
¡û
>C141006321
CP006650
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 [CP006650]
725020
725096
+
Pro
TGG
[Ensembl]
¡û
>W1810235968
PPGA01000002
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
418852
418928
+
Pro
TGG
[ENA]
¡û
>W1810585310
QFCQ01000014
Alphaproteobacteria
Paracoccus thiocyanatus SST [QFCQ]
40333
40257
-
Pro
TGG
[ENA]
¡û
>W1810750748
QOZU01000078
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
6707
6631
-
Pro
TGG
[ENA]
¡û
>W1810759471
QPJL01000007
Alphaproteobacteria
Paracoccus lutimaris CECT 8525 [QPJL]
177704
177780
+
Pro
TGG
[ENA]
¡û
>W1810762321
QPML01000035
Alphaproteobacteria
Paracoccus versutus MAL 1HM19 [QPML]
53217
53141
-
Pro
TGG
[ENA]
¡û
>W1810862276
QTUJ01000004
Alphaproteobacteria
Paracoccus versutus DSM 17099 [QTUJ]
80681
80605
-
Pro
TGG
[ENA]
¡û
>W1810884864
QUMX01000025
Alphaproteobacteria
Paracoccus versutus DSM 582 [QUMX]
21704
21780
+
Pro
TGG
[ENA]
¡û
>W1511348597
JRKO01000010
Alphaproteobacteria
Paracoccus versutus DSM 582 [JRKO]
87031
86955
-
Pro
TGG
[ENA]
¡û
>W11143034
AEPN01000003
Alphaproteobacteria
Paracoccus sp. TRP [AEPN]
649
573
-
Pro
TGG
[ENA]
¡û
>W1610716524
LLWQ01000099
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
40943
40867
-
Pro
TGG
[ENA]
¡û
>W1610750115
LNBC01000009
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
20190
20114
-
Pro
TGG
[ENA]
¡û
>W1710547700
FODE01000025
Alphaproteobacteria
Paracoccus alcaliphilus [FODE]
55636
55560
-
Pro
TGG
[ENA]
¡û
>W1710563608
FOPU01000055
Alphaproteobacteria
Paracoccus aminovorans [FOPU]
504
428
-
Pro
TGG
[ENA]
¡û
>W1710571565
FOWA01000019
Alphaproteobacteria
Paracoccus pantotrophus [FOWA]
42248
42172
-
Pro
TGG
[ENA]
¡û
>W1710581753
FPKI01000005
Alphaproteobacteria
Paracoccus pantotrophus [FPKI]
125559
125483
-
Pro
TGG
[ENA]
¡û
>W1710596186
FTMK01000006
Alphaproteobacteria
Paracoccus thiocyanatus [FTMK]
6191
6115
-
Pro
TGG
[ENA]
¡û
>W1710608107
FXAQ01000002
Alphaproteobacteria
Paracoccus sp. J56 [FXAQ]
88921
88845
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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