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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275212 (18 seq.)
>W1710900542
LNKA01000008
Gammaproteobacteria
Legionella adelaidensis [LNKA]
88
164
+
Ile
GAT
[ENA]
¡û
>W1710919862
LNYA01000016
Gammaproteobacteria
Legionella erythra [LNYA]
124
200
+
Ile
GAT
[ENA]
¡û
>W1710920165
LNYH01000149
Gammaproteobacteria
Legionella israelensis [LNYH]
41535
41459
-
Ile
GAT
[ENA]
¡û
>W1710920311
LNYL01000033
Gammaproteobacteria
Legionella maceachernii [LNYL]
157203
157279
+
Ile
GAT
[ENA]
¡û
>W1710920365
LNYM01000016
Gammaproteobacteria
Legionella micdadei [LNYM]
216782
216706
-
Ile
GAT
[ENA]
¡û
>C171110827
CP020614
Gammaproteobacteria
Legionella micdadei NZ2015 [CP020614]
2952230
2952154
-
Ile
GAT
-
¡û
>C171110867
CP020615
Gammaproteobacteria
Legionella micdadei NZ2016 [CP020615]
2954826
2954750
-
Ile
GAT
-
¡û
>WENV170774414
LXNJ01038483
[LXNJ] sponge metagenome; marine sponge reef
457
533
+
Ile
GAT
[ENA]
¢þ
>C191158528
CP038254
Gammaproteobacteria
Legionella israelensis HL-0427-4011 [CP038254]
2904454
2904378
-
Ile
GAT
-
¡û
>C191159106
CP038273
Gammaproteobacteria
Legionella israelensis Bercovier 4 [CP038273]
1886788
1886864
+
Ile
GAT
-
¡û
>C151103432
LN614830
Gammaproteobacteria
Legionella micdadei ATCC 33218 [LN614830]
598891
598967
+
Ile
GAT
[Ensembl]
¡û
>W1610584663
LCUB01000030
Gammaproteobacteria
Legionella micdadei [LCUB]
358
282
-
Ile
GAT
[ENA]
¡û
>W1610760529
LNKA01000008
Gammaproteobacteria
Legionella adelaidensis [LNKA]
88
164
+
Ile
GAT
[ENA]
¡û
>W1610777760
LNYA01000016
Gammaproteobacteria
Legionella erythra [LNYA]
124
200
+
Ile
GAT
[ENA]
¡û
>W1610778063
LNYH01000149
Gammaproteobacteria
Legionella israelensis [LNYH]
41535
41459
-
Ile
GAT
[ENA]
¡û
>W1610778209
LNYL01000033
Gammaproteobacteria
Legionella maceachernii [LNYL]
157203
157279
+
Ile
GAT
[ENA]
¡û
>W1610778263
LNYM01000016
Gammaproteobacteria
Legionella micdadei [LNYM]
216782
216706
-
Ile
GAT
[ENA]
¡û
>W1710703854
LCUB01000030
Gammaproteobacteria
Legionella micdadei [LCUB]
358
282
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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