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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275473 (116 seq.)
>W1711144069
LVHW01000001
Gammaproteobacteria
Pantoea agglomerans [LVHW]
545909
545833
-
Pro
GGG
[ENA]
¡û
>W1711223342
LXSW01000024
Gammaproteobacteria
Pantoea agglomerans pv. betae [LXSW]
269927
270003
+
Pro
GGG
[ENA]
¡û
>W1711223415
LXSX01000009
Gammaproteobacteria
Pantoea agglomerans pv. gypsophilae [LXSX]
285791
285867
+
Pro
GGG
[ENA]
¡û
>W1711424790
MIEI01000070
Gammaproteobacteria
Pantoea brenneri [MIEI]
24272
24348
+
Pro
GGG
[ENA]
¡û
>W1711437555
MIPO01000049
Gammaproteobacteria
Pantoea deleyi [MIPO]
11035
10959
-
Pro
GGG
[ENA]
¡û
>W1711455343
MIZY01000009
Gammaproteobacteria
Pantoea brenneri conspicua [MIZY]
127562
127638
+
Pro
GGG
[ENA]
¡û
>W1711513187
MLFN01000056
Gammaproteobacteria
Pantoea conspicua [MLFN]
5821
5745
-
Pro
GGG
[ENA]
¡û
>W1711513325
MLFP01000086
Gammaproteobacteria
Pantoea rodasii [MLFP]
56767
56691
-
Pro
GGG
[ENA]
¡û
>W1711513405
MLFR01000032
Gammaproteobacteria
Pantoea rwandensis [MLFR]
70092
70168
+
Pro
GGG
[ENA]
¡û
>W1711745649
MUJJ01000002
Gammaproteobacteria
Pantoea vagans [MUJJ]
339496
339572
+
Pro
GGG
[ENA]
¡û
>W131063546
ANKX01000087
Gammaproteobacteria
Pantoea agglomerans 299R [ANKX]
42510
42586
+
Pro
GGG
[ENA]
¡û
>W131087752
AOCZ01000030
Gammaproteobacteria
Winslowiella toletana DAPP-PG 735 [AOCZ]
45232
45308
+
Pro
GGG
[ENA]
¡û
>W1712070515
NGNU01000035
Gammaproteobacteria
Pantoea agglomerans [NGNU]
24493
24569
+
Pro
GGG
[ENA]
¡û
>C171052815
CP016889
Gammaproteobacteria
Pantoea agglomerans C410P1 [CP016889]
215871
215947
+
Pro
GGG
-
¡û
>WENV180310535
OBJT01002876
[OBJT] soil metagenome; soil
3315
3391
+
Pro
GGG
[ENA]
¢þ
>W141071670
ASJI01000014
Gammaproteobacteria
Pantoea agglomerans Tx10 [ASJI]
203925
204001
+
Pro
GGG
[ENA]
¡û
>W141158516
AXOF01000007
Gammaproteobacteria
Pantoea agglomerans Eh318 [AXOF]
44606
44682
+
Pro
GGG
[ENA]
¡û
>WENV170000354
AEWW01016985
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
19551
19475
-
Pro
GGG
[ENA]
¢þ
>WENV170700106
LIDZ01002639
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
1155
1079
-
Pro
GGG
[ENA]
¢þ
>W141466742
JFOK01000023
Gammaproteobacteria
Pantoea agglomerans [JFOK]
348748
348672
-
Pro
GGG
[ENA]
¡û
>C181047036
CP020820
Gammaproteobacteria
Pantoea vagans FBS135 [CP020820]
1409638
1409562
-
Pro
GGG
-
¡û
>C181164423
CP028349
Gammaproteobacteria
Pantoea vagans PV989 [CP028349]
3274219
3274295
+
Pro
GGG
-
¡û
>C191077133
CP031649
Gammaproteobacteria
Pantoea agglomerans TH81 [CP031649]
1376106
1376030
-
Pro
GGG
-
¡û
>C191120274
CP034148
Gammaproteobacteria
Pantoea agglomerans L15 [CP034148]
2694137
2694213
+
Pro
GGG
-
¡û
>C191126201
CP034469
Gammaproteobacteria
Pantoea agglomerans CFSAN047153 [CP034469]
2739597
2739673
+
Pro
GGG
-
¡û
>C191126272
CP034474
Gammaproteobacteria
Pantoea agglomerans CFSAN047154 [CP034474]
2512389
2512465
+
Pro
GGG
-
¡û
>C191155828
CP037950
Gammaproteobacteria
Erwinia sp. QL-Z3 [CP037950]
4652726
4652802
+
Pro
GGG
-
¡û
>C191162346
CP038853
Gammaproteobacteria
Pantoea vagans LMG 24199 [CP038853]
1314269
1314193
-
Pro
GGG
-
¡û
>C191175013
CP040095
Gammaproteobacteria
Pantoea sp. SO10 [CP040095]
2818273
2818349
+
Pro
GGG
-
¡û
>W141712644
JMRT01000080
Gammaproteobacteria
Pantoea sp. 3.5.1 [JMRT]
24050
24126
+
Pro
GGG
[ENA]
¡û
>W141728276
JNGC01000001
Gammaproteobacteria
Pantoea agglomerans [JNGC]
2511554
2511630
+
Pro
GGG
[ENA]
¡û
>W141753860
JNVA01000050
Gammaproteobacteria
Pantoea agglomerans [JNVA]
24576
24652
+
Pro
GGG
[ENA]
¡û
>W141807692
JPOT01000001
Gammaproteobacteria
Pantoea agglomerans [JPOT]
360329
360253
-
Pro
GGG
[ENA]
¡û
>W141821439
JQNO01000001
Gammaproteobacteria
Pantoea sp. 9140 [JQNO]
2559542
2559618
+
Pro
GGG
[ENA]
¡û
>W1910502021
FYAZ01000006
Gammaproteobacteria
Pantoea agglomerans [FYAZ]
388266
388190
-
Pro
GGG
[ENA]
¡û
>W1910910453
NHAS01000001
Gammaproteobacteria
Pantoea agglomerans JM1 [NHAS]
140574
140498
-
Pro
GGG
[ENA]
¡û
>W1910910614
NHBE01000009
Gammaproteobacteria
Pantoea sp. AV62 [NHBE]
526
450
-
Pro
GGG
[ENA]
¡û
>W1911219286
NRSO01000001
Gammaproteobacteria
Pantoea vagans TYU1 [NRSO]
2079708
2079632
-
Pro
GGG
[ENA]
¡û
>W1911492760
OBEC01000001
Gammaproteobacteria
Pantoea sp. GL120224-02 [OBEC]
137958
137882
-
Pro
GGG
[ENA]
¡û
>W1911496852
OCMY01000001
Gammaproteobacteria
Pantoea floridensis JKS000234 [OCMY]
3336947
3336871
-
Pro
GGG
[ENA]
¡û
>W1911568634
PCQJ01000006
Gammaproteobacteria
Erwinia billingiae MYb121 [PCQJ]
204617
204541
-
Pro
GGG
[ENA]
¡û
>W1911573770
PDEG01000003
Gammaproteobacteria
Pantoea agglomerans FDAARGOS_407 [PDEG]
3630053
3629977
-
Pro
GGG
[ENA]
¡û
>W1911671086
QFZW01000001
Gammaproteobacteria
Pantoea agglomerans CFBP13505 [QFZW]
161343
161267
-
Pro
GGG
[ENA]
¡û
>W1911671730
QGAH01000003
Gammaproteobacteria
Pantoea agglomerans CFBP13516 [QGAH]
315706
315782
+
Pro
GGG
[ENA]
¡û
>W1911672035
QGAM01000001
Gammaproteobacteria
Pantoea agglomerans CFBP13532 [QGAM]
139762
139686
-
Pro
GGG
[ENA]
¡û
>W1810071450
PEES01000001
Gammaproteobacteria
Enterobacteriaceae bacterium JKS000233 [PEES]
666332
666256
-
Pro
GGG
[ENA]
¡û
>W1810147228
PIQI01000011
Gammaproteobacteria
Pantoea rodasii DSM 26611 [PIQI]
774526
774602
+
Pro
GGG
[ENA]
¡û
>W1810177772
PJRT01000029
Gammaproteobacteria
Pantoea endophytica 596 [PJRT]
178088
178012
-
Pro
GGG
[ENA]
¡û
>W1810325545
PUEK01000001
Gammaproteobacteria
Pantoea ananatis MHSD5 [PUEK]
384793
384717
-
Pro
GGG
[ENA]
¡û
>W1810326349
PUFZ01000005
Gammaproteobacteria
Pantoea sp. ARC607 [PUFZ]
29437
29361
-
Pro
GGG
[ENA]
¡û
>W1810326444
PUGA01000032
Gammaproteobacteria
Pantoea sp. ARC270 [PUGA]
36123
36199
+
Pro
GGG
[ENA]
¡û
>W1810597286
QGHE01000001
Gammaproteobacteria
Pantoea agglomerans PNG 92-11 [QGHE]
871606
871682
+
Pro
GGG
[ENA]
¡û
>W1810629102
QICZ01000001
Gammaproteobacteria
Pantoea sp. JKS000250 [QICZ]
985333
985409
+
Pro
GGG
[ENA]
¡û
>W1810676952
QKMJ01000002
Gammaproteobacteria
Pantoea sp. AG1095 [QKMJ]
266684
266608
-
Pro
GGG
[ENA]
¡û
>W1810686188
QLAA01000003
Gammaproteobacteria
Pantoea agglomerans Bl3 [QLAA]
394054
393978
-
Pro
GGG
[ENA]
¡û
>W1810783625
QQXH01000006
Gammaproteobacteria
Pantoea agglomerans BD 1212 [QQXH]
139420
139496
+
Pro
GGG
[ENA]
¡û
>W1810783687
QQXI01000194
Gammaproteobacteria
Pantoea agglomerans BD 1274 [QQXI]
3478
3554
+
Pro
GGG
[ENA]
¡û
>C151051588
CP009454
Gammaproteobacteria
Pantoea rwandensis ND04 [CP009454]
1954683
1954607
-
Pro
GGG
[Ensembl]
¡û
>W1510092970
CEFO01000002
Gammaproteobacteria
Enterobacter ludwigii EnVs6 [CEFO]
308054
308130
+
Pro
GGG
[ENA]
¡û
>W1510093086
CEFP01000006
Gammaproteobacteria
Pantoea vagans PaVv11 [CEFP]
370798
370722
-
Pro
GGG
[ENA]
¡û
>W1510093140
CEFQ01000005
Gammaproteobacteria
Enterobacter ludwigii EnVs2 [CEFQ]
806008
806084
+
Pro
GGG
[ENA]
¡û
>W1510093226
CEFR01000089
Gammaproteobacteria
Enterobacter ludwigii LecVs2 [CEFR]
364183
364107
-
Pro
GGG
[ENA]
¡û
>W1510093518
CEGN01000012
Gammaproteobacteria
Pantoea vagans PaVv9 [CEGN]
214435
214511
+
Pro
GGG
[ENA]
¡û
>W1510093519
CEGN01000012
Gammaproteobacteria
Pantoea vagans PaVv9 [CEGN]
214541
214617
+
Pro
GGG
[ENA]
¡û
>W1510093563
CEGN01000039
Gammaproteobacteria
Pantoea vagans PaVv9 [CEGN]
1758
1834
+
Pro
GGG
[ENA]
¡û
>W1510093564
CEGN01000039
Gammaproteobacteria
Pantoea vagans PaVv9 [CEGN]
1864
1940
+
Pro
GGG
[ENA]
¡û
>W1510100317
CEMW01000012
Gammaproteobacteria
Pantoea vagans PaVv7 [CEMW]
214435
214511
+
Pro
GGG
[ENA]
¡û
>W1510100318
CEMW01000012
Gammaproteobacteria
Pantoea vagans PaVv7 [CEMW]
214541
214617
+
Pro
GGG
[ENA]
¡û
>W1510100362
CEMW01000039
Gammaproteobacteria
Pantoea vagans PaVv7 [CEMW]
1758
1834
+
Pro
GGG
[ENA]
¡û
>W1510100363
CEMW01000039
Gammaproteobacteria
Pantoea vagans PaVv7 [CEMW]
1864
1940
+
Pro
GGG
[ENA]
¡û
>W10126833
AEDL01000007
Gammaproteobacteria
Pantoea sp. aB [AEDL]
218418
218494
+
Pro
GGG
[ENA]
¡û
>WENV11100712
AEWW01016985
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
19551
19475
-
Pro
GGG
[ENA]
¡û
>W1511304404
JPKP01000003
Gammaproteobacteria
Pantoea vagans MP7 [JPKP]
342527
342603
+
Pro
GGG
[ENA]
¡û
>W1511304462
JPKQ01000007
Gammaproteobacteria
Pantoea agglomerans MP2 [JPKQ]
200847
200923
+
Pro
GGG
[ENA]
¡û
>C11118244
CP002206
Gammaproteobacteria
Pantoea vagans C9-1 [CP002206]
2179874
2179950
+
Pro
GGG
[Ensembl]
¡û
>W1511356701
JRUP01000014
Gammaproteobacteria
Enterobacter cancerogenus M004 [JRUP]
351380
351456
+
Pro
GGG
[ENA]
¡û
>W1511356778
JRUQ01000044
Gammaproteobacteria
Erwinia typographi M043b [JRUQ]
27025
27101
+
Pro
GGG
[ENA]
¡û
>W1511358716
JRXE01000034
Gammaproteobacteria
Winslowiella iniecta B120 [JRXE]
8255
8331
+
Pro
GGG
[ENA]
¡û
>W1511358768
JRXF01000033
Gammaproteobacteria
Winslowiella iniecta B149 [JRXF]
7635
7711
+
Pro
GGG
[ENA]
¡û
>W1511387468
JSUT01000005
Gammaproteobacteria
Pantoea sp. MBLJ3 [JSUT]
424741
424665
-
Pro
GGG
[ENA]
¡û
>W1511402206
JTJJ01000190
Gammaproteobacteria
Pantoea rodasii ND03 [JTJJ]
115
39
-
Pro
GGG
[ENA]
¡û
>W11126916
ADWZ01000003
Gammaproteobacteria
Pantoea agglomerans SL1_M5 [ADWZ]
323327
323403
+
Pro
GGG
[ENA]
¡û
>W1511483295
JWLQ01000013
Gammaproteobacteria
Pantoea agglomerans LMAE-2 [JWLQ]
286509
286433
-
Pro
GGG
[ENA]
¡û
>W11134094
AEDL01000007
Gammaproteobacteria
Pantoea sp. aB [AEDL]
218418
218494
+
Pro
GGG
[ENA]
¡û
>W1511517618
JXXL01000009
Gammaproteobacteria
Pantoea anthophila 11·î2Æü [JXXL]
266713
266789
+
Pro
GGG
[ENA]
¡û
>W1511526661
JYGW01000016
Gammaproteobacteria
Pantoea agglomerans GB1 [JYGW]
394879
394803
-
Pro
GGG
[ENA]
¡û
>W1511547664
JZRD01000001
Gammaproteobacteria
Pantoea sp. SM3 [JZRD]
110642
110718
+
Pro
GGG
[ENA]
¡û
>W1511547925
JZRH01000017
Gammaproteobacteria
Pantoea sp. BL1 [JZRH]
96270
96346
+
Pro
GGG
[ENA]
¡û
>W1511685978
LFQL01000040
Gammaproteobacteria
Pantoea vagans ZBG6 [LFQL]
49565
49489
-
Pro
GGG
[ENA]
¡û
>W1511699748
LGIS01000030
Gammaproteobacteria
Pantoea sp. RIT-PI-b [LGIS]
27915
27991
+
Pro
GGG
[ENA]
¡û
>C121016300
FP236843
Gammaproteobacteria
Erwinia billingiae Eb661 [FP236843]
3375533
3375609
+
Pro
GGG
[Ensembl]
¡û
>C161035410
CP011427
Gammaproteobacteria
Pantoea vagans ND02 [CP011427]
1214891
1214815
-
Pro
GGG
[Ensembl]
¡û
>C161066739
CP014129
Gammaproteobacteria
Pantoea vagans FDAARGOS_160 [CP014129]
2926329
2926405
+
Pro
GGG
[Ensembl]
¡û
>W121060433
AJFP01000001
Gammaproteobacteria
Pantoea sp. Sc1 [AJFP]
1450106
1450030
-
Pro
GGG
[ENA]
¡û
>W121084813
AKIT01000037
Gammaproteobacteria
Pantoea sp. YR343 [AKIT]
156685
156761
+
Pro
GGG
[ENA]
¡û
>W121084857
AKIU01000035
Gammaproteobacteria
Pantoea sp. GM01 [AKIU]
167544
167468
-
Pro
GGG
[ENA]
¡û
>W121123739
BAEF01000003
Gammaproteobacteria
Pantoea agglomerans IG1 [BAEF]
496076
496152
+
Pro
GGG
[ENA]
¡û
>W1610053176
BBOC01000004
Gammaproteobacteria
Type-D symbiont of Plautia stali [BBOC]
47455
47379
-
Pro
GGG
[ENA]
¡û
>W1610053283
BBOD01000026
Gammaproteobacteria
Type-E symbiont of Plautia stali [BBOD]
68130
68054
-
Pro
GGG
[ENA]
¡û
>W1610053333
BBOE01000004
Gammaproteobacteria
Type-F symbiont of Plautia stali [BBOE]
174727
174803
+
Pro
GGG
[ENA]
¡û
>W1610076805
BCZA01000005
Gammaproteobacteria
Pantoea agglomerans NBRC 102470 [BCZA]
43637
43713
+
Pro
GGG
[ENA]
¡û
>W1610460972
FKKH01000001
Gammaproteobacteria
Pantoea sp. 9133 [FKKH]
2410011
2409935
-
Pro
GGG
[ENA]
¡û
>W1610631636
LIME01000007
Gammaproteobacteria
Pantoea agglomerans [LIME]
201819
201895
+
Pro
GGG
[ENA]
¡û
>W1610955077
LVHW01000001
Gammaproteobacteria
Pantoea agglomerans [LVHW]
545909
545833
-
Pro
GGG
[ENA]
¡û
>W1611007713
LXSW01000024
Gammaproteobacteria
Pantoea agglomerans pv. betae [LXSW]
269927
270003
+
Pro
GGG
[ENA]
¡û
>W1611007786
LXSX01000009
Gammaproteobacteria
Pantoea agglomerans pv. gypsophilae [LXSX]
285791
285867
+
Pro
GGG
[ENA]
¡û
>W1710049554
BBOC01000004
Gammaproteobacteria
Type-D symbiont of Plautia stali [BBOC]
47455
47379
-
Pro
GGG
[ENA]
¡û
>W1710049661
BBOD01000026
Gammaproteobacteria
Type-E symbiont of Plautia stali [BBOD]
68130
68054
-
Pro
GGG
[ENA]
¡û
>W1710049711
BBOE01000004
Gammaproteobacteria
Type-F symbiont of Plautia stali [BBOE]
174727
174803
+
Pro
GGG
[ENA]
¡û
>W1710074494
BCZA01000005
Gammaproteobacteria
Pantoea agglomerans NBRC 102470 [BCZA]
43637
43713
+
Pro
GGG
[ENA]
¡û
>W1710566671
FOSD01000004
Gammaproteobacteria
Pantoea symbiotica YR512 [FOSD]
356093
356017
-
Pro
GGG
[ENA]
¡û
>W1710570590
FOVG01000001
Gammaproteobacteria
Pantoea varia OV426 [FOVG]
443234
443158
-
Pro
GGG
[ENA]
¡û
>W1710578705
FPBU01000004
Gammaproteobacteria
Pantoea sp. YR525 [FPBU]
356093
356017
-
Pro
GGG
[ENA]
¡û
>W1710600302
FUWI01000003
Gammaproteobacteria
Pantoea eucalypti agglomerans [FUWI]
209663
209739
+
Pro
GGG
[ENA]
¡û
>W1710754856
LHXI01000014
Gammaproteobacteria
Erwinia billingiae [LHXI]
117318
117394
+
Pro
GGG
[ENA]
¡û
>W1710764451
LIME01000007
Gammaproteobacteria
Pantoea agglomerans [LIME]
201819
201895
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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