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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275526 (102 seq.)
>W1710892869
LNEF01000031
Betaproteobacteria
Nitrosomonadales bacterium Ga0074132 [LNEF]
31231
31155
-
Pro
TGG
[ENA]
¡û
>W1711505600
MKVR01000047
Betaproteobacteria
Nitrosospira sp. 56-18 [MKVR]
11884
11960
+
Pro
TGG
[ENA]
¡û
>C014759
AL954747
Betaproteobacteria
Nitrosomonas europaea ATCC 19718 [AL954747]
1461024
1460948
-
Pro
TGG
[Ensembl]
¡û
>C014800
CP000450
Betaproteobacteria
Nitrosomonas eutropha C91 [CP000450]
1329425
1329349
-
Pro
TGG
[Ensembl]
¡û
>C015139
CP000103
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 [CP000103]
253129
253205
+
Pro
TGG
[Ensembl]
¡û
>WENV180285618
OBID01571688
[OBID] metagenome; sludge
143
67
-
Pro
TGG
[ENA]
¢þ
>WENV180296495
OBJA01000665
[OBJA] soil metagenome; sediment, water from around vicinity
4020
3944
-
Pro
TGG
[ENA]
¢þ
>WENV180372217
OBOI01045475
[OBOI] sediment metagenome; sediment
344
268
-
Pro
TGG
[ENA]
¢þ
>w002423
AABB02000001
Betaproteobacteria
Nitrosomonas europaea [AABB]
1461026
1460953
-
Pro
TGG
[ENA]
¡û
>WENV181168346
OEIU01291114
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
214
138
-
Pro
TGG
[ENA]
¢þ
>WENV181387245
OFRL01067951
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
241
165
-
Pro
TGG
[ENA]
¢þ
>WENV183664716
ORJL010402147
[ORJL] groundwater metagenome; groundwater
9633
9709
+
Pro
TGG
[ENA]
¢þ
>WENV183666295
ORJL010539054
[ORJL] groundwater metagenome; groundwater
2810
2886
+
Pro
TGG
[ENA]
¢þ
>WENV183666934
ORJL010598001
[ORJL] groundwater metagenome; groundwater
1981
1905
-
Pro
TGG
[ENA]
¢þ
>WENV183669372
ORJL010832428
[ORJL] groundwater metagenome; groundwater
89
13
-
Pro
TGG
[ENA]
¢þ
>WENV183673952
ORJL011334873
[ORJL] groundwater metagenome; groundwater
1538
1462
-
Pro
TGG
[ENA]
¢þ
>WENV183674471
ORJL011393496
[ORJL] groundwater metagenome; groundwater
219
295
+
Pro
TGG
[ENA]
¢þ
>WENV183679476
ORMF010066693
[ORMF] groundwater metagenome; groundwater
94
18
-
Pro
TGG
[ENA]
¢þ
>WENV183679832
ORMF010110310
[ORMF] groundwater metagenome; groundwater
14230
14154
-
Pro
TGG
[ENA]
¢þ
>WENV183682598
ORMF010466030
[ORMF] groundwater metagenome; groundwater
6218
6294
+
Pro
TGG
[ENA]
¢þ
>WENV183683698
ORMF010609826
[ORMF] groundwater metagenome; groundwater
64533
64609
+
Pro
TGG
[ENA]
¢þ
>WENV183687281
ORMF011123057
[ORMF] groundwater metagenome; groundwater
604
680
+
Pro
TGG
[ENA]
¢þ
>WENV183688166
ORMF011246737
[ORMF] groundwater metagenome; groundwater
48
124
+
Pro
TGG
[ENA]
¢þ
>WENV183693302
ORMF012058858
[ORMF] groundwater metagenome; groundwater
436
512
+
Pro
TGG
[ENA]
¢þ
>WENV170555517
CXWL01000892
[CXWL] groundwater metagenome; biofilm material
7080
7156
+
Pro
TGG
[ENA]
¢þ
>WENV170576582
FRDC01000988
[FRDC] freshwater metagenome; water
7486
7562
+
Pro
TGG
[ENA]
¢þ
>WENV170577655
FSSH01000443
[FSSH] freshwater metagenome; drinking water
36369
36293
-
Pro
TGG
[ENA]
¢þ
>WENV170714886
LNFM01111745
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1474
1550
+
Pro
TGG
[ENA]
¢þ
>C181049331
CP021106
Betaproteobacteria
Nitrosospira lacus APG3 [CP021106]
353713
353637
-
Pro
TGG
-
¡û
>W09103413
AAJE01000029
Betaproteobacteria
Nitrosomonas eutropha C71 [AAJE]
18831
18755
-
Pro
TGG
[ENA]
¡û
>W141558424
JHVX01000005
Betaproteobacteria
Nitrosospira briensis C-128 [JHVX]
216852
216776
-
Pro
TGG
[ENA]
¡û
>W141565170
JIBI01000052
Betaproteobacteria
Nitrosomonas cryotolerans ATCC 49181 [JIBI]
15852
15776
-
Pro
TGG
[ENA]
¡û
>W09133577
ACPG01000025
Betaproteobacteria
Nitrosomonas sp. AL212 [ACPG]
27222
27298
+
Pro
TGG
[ENA]
¡û
>W1910226490
FMWO01000032
Betaproteobacteria
Nitrosomonas mobilis [FMWO]
28518
28442
-
Pro
TGG
[ENA]
¡û
>W1910228558
FNVK01000010
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 Nl13 [FNVK]
51235
51159
-
Pro
TGG
[ENA]
¡û
>W1910338848
FSRO01000001
Betaproteobacteria
Nitrosomonas cryotolerans ATCC 49181 [FSRO]
1353628
1353552
-
Pro
TGG
[ENA]
¡û
>W1911496578
OCMU01000001
Betaproteobacteria
Nitrosomonas ureae Nm42 [OCMU]
575617
575693
+
Pro
TGG
[ENA]
¡û
>W1911496909
OCMZ01000001
Betaproteobacteria
Nitrosovibrio sp. Nv4 [OCMZ]
411492
411416
-
Pro
TGG
[ENA]
¡û
>W1810389559
PXXU01000038
Betaproteobacteria
Nitrosomonas supralitoralis APG5 [PXXU]
33035
33111
+
Pro
TGG
[ENA]
¡û
>W1810463552
PZZQ01000008
Betaproteobacteria
Nitrosomonas eutropha Nm19 [PZZQ]
87996
88072
+
Pro
TGG
[ENA]
¡û
>W1810463593
PZZR01000003
Betaproteobacteria
Nitrosospira sp. Nsp22 [PZZR]
383218
383142
-
Pro
TGG
[ENA]
¡û
>W1810463652
PZZS01000015
Betaproteobacteria
Nitrosomonas nitrosa Nm91 [PZZS]
2413
2337
-
Pro
TGG
[ENA]
¡û
>W1810463681
PZZT01000012
Betaproteobacteria
Nitrosomonas sp. Nm141 [PZZT]
62963
62887
-
Pro
TGG
[ENA]
¡û
>W1810464101
QAAC01000028
Betaproteobacteria
Nitrosospira sp. Nsp6 [QAAC]
14067
14143
+
Pro
TGG
[ENA]
¡û
>W1810476851
QAOI01000012
Betaproteobacteria
Nitrosomonas oligotropha Nm49 [QAOI]
10358
10282
-
Pro
TGG
[ENA]
¡û
>W1810476942
QAOK01000012
Betaproteobacteria
Nitrosospira multiformis Nl12 [QAOK]
53428
53504
+
Pro
TGG
[ENA]
¡û
>W1810476984
QAOL01000016
Betaproteobacteria
Nitrosomonas ureae Nm4 [QAOL]
28344
28420
+
Pro
TGG
[ENA]
¡û
>W1810477122
QAOO01000009
Betaproteobacteria
Nitrosomonas nitrosa Nm90 [QAOO]
64782
64706
-
Pro
TGG
[ENA]
¡û
>W1810477288
QAOR01000028
Betaproteobacteria
Nitrosospira sp. Nsp5 [QAOR]
14067
14143
+
Pro
TGG
[ENA]
¡û
>W1810477420
QAOU01000004
Betaproteobacteria
Nitrosospira sp. Nsp2 [QAOU]
67919
67995
+
Pro
TGG
[ENA]
¡û
>W1810503435
QBKC01000011
Betaproteobacteria
Nitrosospira sp. Nsp37 [QBKC]
31619
31543
-
Pro
TGG
[ENA]
¡û
>W1810628659
QICQ01000036
Betaproteobacteria
Nitrosomonas eutropha Nm 57 [QICQ]
9794
9870
+
Pro
TGG
[ENA]
¡û
>W1810658836
QJJP01000008
Betaproteobacteria
Nitrosomonas sp. Nm84 [QJJP]
11983
12059
+
Pro
TGG
[ENA]
¡û
>W1810659203
QJJW01000020
Betaproteobacteria
Nitrosomonas ureae Nm5 [QJJW]
27980
28056
+
Pro
TGG
[ENA]
¡û
>W1810696196
QLTB01000015
Betaproteobacteria
Nitrosospira multiformis Nl15 [QLTB]
60859
60935
+
Pro
TGG
[ENA]
¡û
>W1810696243
QLTC01000028
Betaproteobacteria
Nitrosospira multiformis Nsp16 [QLTC]
3892
3816
-
Pro
TGG
[ENA]
¡û
>W1810696247
QLTD01000001
Betaproteobacteria
Nitrosospira multiformis Nl8 [QLTD]
57984
58060
+
Pro
TGG
[ENA]
¡û
>W1810696303
QLTE01000008
Betaproteobacteria
Nitrosomonas sp. Nm143 [QLTE]
75287
75363
+
Pro
TGG
[ENA]
¡û
>C151082868
CP011451
Betaproteobacteria
Nitrosomonas communis Nm2 [CP011451]
3146106
3146030
-
Pro
TGG
[Ensembl]
¡û
>C151094444
CP012371
Betaproteobacteria
Nitrosospira briensis C-128 [CP012371]
1993501
1993577
+
Pro
TGG
-
¡û
>C11115625
CP002552
Betaproteobacteria
Nitrosomonas sp. AL212 [CP002552]
2478645
2478721
+
Pro
TGG
[Ensembl]
¡û
>C11115681
CP002876
Betaproteobacteria
Nitrosomonas sp. Is79A3 [CP002876]
1476189
1476113
-
Pro
TGG
[Ensembl]
¡û
>W1511508784
JXQM01000026
Betaproteobacteria
Nitrosospira sp. NpAV [JXQM]
3341
3265
-
Pro
TGG
[ENA]
¡û
>C161055555
CP013341
Betaproteobacteria
Nitrosomonas ureae Nm10 [CP013341]
184625
184701
+
Pro
TGG
[Ensembl]
¡û
>W1610753135
LNEF01000031
Betaproteobacteria
Nitrosomonadales bacterium Ga0074132 [LNEF]
31231
31155
-
Pro
TGG
[ENA]
¡û
>W1710505682
FMTW01000006
Betaproteobacteria
Nitrosomonas eutropha [FMTW]
88180
88256
+
Pro
TGG
[ENA]
¡û
>W1710505967
FMUF01000008
Betaproteobacteria
Nitrosospira sp. Nsp1 [FMUF]
20108
20184
+
Pro
TGG
[ENA]
¡û
>W1710507306
FMVD01000024
Betaproteobacteria
Nitrosospira sp. Nsp13 [FMVD]
2587
2511
-
Pro
TGG
[ENA]
¡û
>W1710507955
FMVQ01000017
Betaproteobacteria
Nitrosospira sp. Nl5 [FMVQ]
1757
1681
-
Pro
TGG
[ENA]
¡û
>W1710509162
FMWY01000022
Betaproteobacteria
Nitrosospira sp. Nsp18 [FMWY]
51759
51835
+
Pro
TGG
[ENA]
¡û
>W1710517428
FNDH01000116
Betaproteobacteria
Nitrosomonas sp. Nm132 [FNDH]
320
396
+
Pro
TGG
[ENA]
¡û
>W1710527364
FNKY01000001
Betaproteobacteria
Nitrosospira multiformis [FNKY]
341736
341660
-
Pro
TGG
[ENA]
¡û
>W1710527943
FNLN01000012
Betaproteobacteria
Nitrosomonas ureae [FNLN]
47931
47855
-
Pro
TGG
[ENA]
¡û
>W1710528515
FNNH01000003
Betaproteobacteria
Nitrosomonas communis [FNNH]
1837
1761
-
Pro
TGG
[ENA]
¡û
>W1710528753
FNNM01000001
Betaproteobacteria
Nitrosomonas eutropha [FNNM]
161707
161631
-
Pro
TGG
[ENA]
¡û
>W1710529351
FNNX01000005
Betaproteobacteria
Nitrosomonas europaea [FNNX]
71295
71219
-
Pro
TGG
[ENA]
¡û
>W1710529703
FNOE01000003
Betaproteobacteria
Nitrosomonas oligotropha [FNOE]
197997
198073
+
Pro
TGG
[ENA]
¡û
>W1710530699
FNOY01000032
Betaproteobacteria
Nitrosomonas halophila [FNOY]
21944
22020
+
Pro
TGG
[ENA]
¡û
>W1710531183
FNPJ01000008
Betaproteobacteria
Nitrosomonas sp. Nm33 [FNPJ]
53118
53194
+
Pro
TGG
[ENA]
¡û
>W1710531586
FNPQ01000045
Betaproteobacteria
Nitrosomonas sp. Nm58 [FNPQ]
17810
17886
+
Pro
TGG
[ENA]
¡û
>W1710532574
FNQL01000001
Betaproteobacteria
Nitrosospira multiformis [FNQL]
413225
413149
-
Pro
TGG
[ENA]
¡û
>W1710538898
FNUX01000003
Betaproteobacteria
Nitrosomonas ureae [FNUX]
194850
194926
+
Pro
TGG
[ENA]
¡û
>W1710541291
FNYF01000011
Betaproteobacteria
Nitrosomonas eutropha [FNYF]
59665
59741
+
Pro
TGG
[ENA]
¡û
>W1710545216
FOBH01000019
Betaproteobacteria
Nitrosovibrio tenuis [FOBH]
10350
10274
-
Pro
TGG
[ENA]
¡û
>W1710547242
FOCT01000012
Betaproteobacteria
Nitrosospira multiformis [FOCT]
65800
65876
+
Pro
TGG
[ENA]
¡û
>W1710548175
FODO01000002
Betaproteobacteria
Nitrosomonas oligotropha [FODO]
197996
198072
+
Pro
TGG
[ENA]
¡û
>W1710548593
FODX01000006
Betaproteobacteria
Nitrosovibrio sp. Nv6 [FODX]
60725
60801
+
Pro
TGG
[ENA]
¡û
>W1710551211
FOFX01000003
Betaproteobacteria
Nitrosomonas ureae [FOFX]
58924
58848
-
Pro
TGG
[ENA]
¡û
>W1710553104
FOHI01000002
Betaproteobacteria
Nitrosospira multiformis [FOHI]
59728
59804
+
Pro
TGG
[ENA]
¡û
>W1710554027
FOID01000005
Betaproteobacteria
Nitrosomonas europaea [FOID]
71295
71219
-
Pro
TGG
[ENA]
¡û
>W1710560194
FONE01000081
Betaproteobacteria
Nitrosomonas sp. Nm166 [FONE]
4526
4450
-
Pro
TGG
[ENA]
¡û
>W1710563655
FOPV01000034
Betaproteobacteria
Nitrosospira sp. Nsp14 [FOPV]
11799
11875
+
Pro
TGG
[ENA]
¡û
>W1710565291
FORD01000006
Betaproteobacteria
Nitrosomonas sp. Nm34 [FORD]
42093
42017
-
Pro
TGG
[ENA]
¡û
>W1710569046
FOUB01000026
Betaproteobacteria
Nitrosomonas communis [FOUB]
51419
51495
+
Pro
TGG
[ENA]
¡û
>W1710569222
FOUF01000020
Betaproteobacteria
Nitrosomonas nitrosa [FOUF]
54572
54496
-
Pro
TGG
[ENA]
¡û
>W1710570778
FOVJ01000003
Betaproteobacteria
Nitrosospira briensis [FOVJ]
46182
46258
+
Pro
TGG
[ENA]
¡û
>W1710571486
FOVY01000010
Betaproteobacteria
Nitrosospira briensis [FOVY]
79684
79608
-
Pro
TGG
[ENA]
¡û
>W1710573510
FOXN01000051
Betaproteobacteria
Nitrosomonas cryotolerans [FOXN]
252
328
+
Pro
TGG
[ENA]
¡û
>W1710578960
FPBZ01000004
Betaproteobacteria
Nitrosospira multiformis [FPBZ]
59413
59489
+
Pro
TGG
[ENA]
¡û
>W1710579584
FPIQ01000018
Betaproteobacteria
Nitrosovibrio sp. Nv17 [FPIQ]
2983
2907
-
Pro
TGG
[ENA]
¡û
>W1710591612
FRBV01000011
Betaproteobacteria
Nitrosospira sp. Nsp11 [FRBV]
69779
69703
-
Pro
TGG
[ENA]
¡û
>W1710600388
FUWK01000005
Betaproteobacteria
Nitrosomonas europaea [FUWK]
71520
71444
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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