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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275548 (90 seq.)
>W1711065186
LSBP01000001
Gammaproteobacteria
Halomonadaceae bacterium T82-2 [LSBP]
193352
193276
-
Asp
GTC
[ENA]
¡û
>W1711065187
LSBP01000001
Gammaproteobacteria
Halomonadaceae bacterium T82-2 [LSBP]
193192
193116
-
Asp
GTC
[ENA]
¡û
>W1711065189
LSBP01000001
Gammaproteobacteria
Halomonadaceae bacterium T82-2 [LSBP]
193004
192928
-
Asp
GTC
[ENA]
¡û
>W1711124870
LUKQ02000020
Gammaproteobacteria
Endozoicomonas atrinae [LUKQ]
11814
11890
+
Asp
GTC
[ENA]
¡û
>W1711124871
LUKQ02000020
Gammaproteobacteria
Endozoicomonas atrinae [LUKQ]
12013
12089
+
Asp
GTC
[ENA]
¡û
>W1711750446
MUMZ01000020
Gammaproteobacteria
Halomonas desiderata SP1 [MUMZ]
40193
40117
-
Asp
GTC
[ENA]
¡û
>W1711750447
MUMZ01000020
Gammaproteobacteria
Halomonas desiderata SP1 [MUMZ]
40088
40012
-
Asp
GTC
[ENA]
¡û
>W1711750449
MUMZ01000020
Gammaproteobacteria
Halomonas desiderata SP1 [MUMZ]
39881
39805
-
Asp
GTC
[ENA]
¡û
>C171118507
CP021382
Gammaproteobacteria
Cellvibrio sp. PSBB006 [CP021382]
373063
373139
+
Asp
GTC
-
¡û
>C171118510
CP021382
Gammaproteobacteria
Cellvibrio sp. PSBB006 [CP021382]
1050962
1051038
+
Asp
GTC
-
¡û
>W131176938
ARKK01000047
Gammaproteobacteria
Halomonas lutea DSM 23508 [ARKK]
72502
72426
-
Asp
GTC
[ENA]
¡û
>W131176939
ARKK01000047
Gammaproteobacteria
Halomonas lutea DSM 23508 [ARKK]
72346
72270
-
Asp
GTC
[ENA]
¡û
>W131196507
ASTJ01000022
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [ASTJ]
45767
45691
-
Asp
GTC
[ENA]
¡û
>W131196509
ASTJ01000022
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [ASTJ]
45563
45487
-
Asp
GTC
[ENA]
¡û
>W131221005
AUAB01000013
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [AUAB]
96620
96544
-
Asp
GTC
[ENA]
¡û
>W131221007
AUAB01000013
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [AUAB]
96416
96340
-
Asp
GTC
[ENA]
¡û
>C006954
CP000285
Gammaproteobacteria
Chromohalobacter salexigens DSM 3043 [CP000285]
986438
986514
+
Asp
GTC
[Ensembl]
¡û
>WENV181856917
OGWN01027329
[OGWN] freshwater metagenome; freshwater
293
219
-
Asp
GTC
[ENA]
¢þ
>WENV182546146
OJBO01001314
[OJBO] seawater metagenome; Sea water
8653
8729
+
Asp
GTC
[ENA]
¢þ
>WENV182546761
OJBP01002249
[OJBP] seawater metagenome; Sea water
3989
4065
+
Asp
GTC
[ENA]
¢þ
>WENV170015138
AZIE01002546
[AZIE] marine sediment metagenome; sample MGS-MCh from oil contaminated site at the lagoon of Mar Chica, located in the north-west
2578
2502
-
Asp
GTC
[ENA]
¢þ
>WENV170015140
AZIE01002546
[AZIE] marine sediment metagenome; sample MGS-MCh from oil contaminated site at the lagoon of Mar Chica, located in the north-west
2392
2316
-
Asp
GTC
[ENA]
¢þ
>WENV170772149
LXNI01013329
[LXNI] sponge metagenome; marine sponge reef
9
85
+
Asp
GTC
[ENA]
¢þ
>WENV170965272
MTEU01000196
[MTEU] soil metagenome; naturally attenuated soil
25044
25120
+
Asp
GTC
[ENA]
¢þ
>WENV170965913
MTEV01009462
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
122
46
-
Asp
GTC
[ENA]
¢þ
>WENV170966355
MTEX01007460
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
12384
12460
+
Asp
GTC
[ENA]
¢þ
>WENV170966357
MTEX01007460
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
12740
12816
+
Asp
GTC
[ENA]
¢þ
>C181084603
CP023559
Gammaproteobacteria
Salinicola tamaricis F01 [CP023559]
768836
768760
-
Asp
GTC
-
¡û
>C181084605
CP023559
Gammaproteobacteria
Salinicola tamaricis F01 [CP023559]
768621
768545
-
Asp
GTC
-
¡û
>W141727005
JNCK01000001
Gammaproteobacteria
Halomonas zincidurans B6 [JNCK]
135706
135782
+
Asp
GTC
[ENA]
¡û
>W141727006
JNCK01000001
Gammaproteobacteria
Halomonas zincidurans B6 [JNCK]
135868
135944
+
Asp
GTC
[ENA]
¡û
>W141727008
JNCK01000001
Gammaproteobacteria
Halomonas zincidurans B6 [JNCK]
136114
136190
+
Asp
GTC
[ENA]
¡û
>W09102573
AAHZ01000024
Gammaproteobacteria
Chromohalobacter salexigens DSM 3043 [AAHZ]
478
554
+
Asp
GTC
[ENA]
¡û
>W141754525
JNVT01000098
Gammaproteobacteria
Gammaproteobacteria bacterium MFB021 [JNVT]
41545
41621
+
Asp
GTC
[ENA]
¡û
>W141754527
JNVT01000098
Gammaproteobacteria
Gammaproteobacteria bacterium MFB021 [JNVT]
41760
41836
+
Asp
GTC
[ENA]
¡û
>W1910840494
MZZK01000001
Gammaproteobacteria
Chromohalobacter salexigens ANJ 207 [MZZK]
1147350
1147426
+
Asp
GTC
[ENA]
¡û
>W1911747122
QWBW01000053
Gammaproteobacteria
Halomonas coralii 362.1 [QWBW]
10394
10470
+
Asp
GTC
[ENA]
¡û
>W1911747123
QWBW01000053
Gammaproteobacteria
Halomonas coralii 362.1 [QWBW]
10549
10625
+
Asp
GTC
[ENA]
¡û
>W1911747125
QWBW01000053
Gammaproteobacteria
Halomonas coralii 362.1 [QWBW]
10737
10813
+
Asp
GTC
[ENA]
¡û
>SRA1001994
SRR001308.169987
Metagenomic characterization of a wastewater treatment plant (SRP000180)
139
215
+
Asp
GTC
[SRA]
>W1810062627
PDOG01000002
Gammaproteobacteria
Halomonas sp. LBP4 [PDOG]
496667
496743
+
Asp
GTC
[ENA]
¡û
>W1810062628
PDOG01000002
Gammaproteobacteria
Halomonas sp. LBP4 [PDOG]
496772
496848
+
Asp
GTC
[ENA]
¡û
>W1810062630
PDOG01000002
Gammaproteobacteria
Halomonas sp. LBP4 [PDOG]
496968
497044
+
Asp
GTC
[ENA]
¡û
>W1810062674
PDOH01000001
Gammaproteobacteria
Halomonas heilongjiangensis 9·î2Æü [PDOH]
71201
71125
-
Asp
GTC
[ENA]
¡û
>W1810062675
PDOH01000001
Gammaproteobacteria
Halomonas heilongjiangensis 9·î2Æü [PDOH]
71096
71020
-
Asp
GTC
[ENA]
¡û
>W1810062677
PDOH01000001
Gammaproteobacteria
Halomonas heilongjiangensis 9·î2Æü [PDOH]
70899
70823
-
Asp
GTC
[ENA]
¡û
>W1810176328
PJPV01000050
Gammaproteobacteria
Endozoicomonas acroporae Acr-14 [PJPV]
1438
1362
-
Asp
GTC
[ENA]
¡û
>W1810176329
PJPV01000050
Gammaproteobacteria
Endozoicomonas acroporae Acr-14 [PJPV]
1241
1165
-
Asp
GTC
[ENA]
¡û
>W1810176331
PJPV01000050
Gammaproteobacteria
Endozoicomonas acroporae Acr-14 [PJPV]
1006
930
-
Asp
GTC
[ENA]
¡û
>W1810176333
PJPV01000050
Gammaproteobacteria
Endozoicomonas acroporae Acr-14 [PJPV]
771
695
-
Asp
GTC
[ENA]
¡û
>W1810176342
PJPV01000066
Gammaproteobacteria
Endozoicomonas acroporae Acr-14 [PJPV]
65593
65669
+
Asp
GTC
[ENA]
¡û
>W1810177437
PJRN01000004
Gammaproteobacteria
Halomonas saliphila LCB169 [PJRN]
74979
74903
-
Asp
GTC
[ENA]
¡û
>W1810177438
PJRN01000004
Gammaproteobacteria
Halomonas saliphila LCB169 [PJRN]
74875
74799
-
Asp
GTC
[ENA]
¡û
>W1810177440
PJRN01000004
Gammaproteobacteria
Halomonas saliphila LCB169 [PJRN]
74671
74595
-
Asp
GTC
[ENA]
¡û
>W1810199951
PNRE01000036
Gammaproteobacteria
Halomonas heilongjiangensis DSM 26881 [PNRE]
70642
70566
-
Asp
GTC
[ENA]
¡û
>W1810199952
PNRE01000036
Gammaproteobacteria
Halomonas heilongjiangensis DSM 26881 [PNRE]
70537
70461
-
Asp
GTC
[ENA]
¡û
>W1810199954
PNRE01000036
Gammaproteobacteria
Halomonas heilongjiangensis DSM 26881 [PNRE]
70340
70264
-
Asp
GTC
[ENA]
¡û
>W1810364758
PVTM01000006
Gammaproteobacteria
Halomonas ventosae USBA 854 [PVTM]
68563
68487
-
Asp
GTC
[ENA]
¡û
>W1810444693
PZJU01000024
Gammaproteobacteria
Salinicola peritrichatus JCM 18795 [PZJU]
37201
37125
-
Asp
GTC
[ENA]
¡û
>W1810609442
QGTY01000006
Gammaproteobacteria
Chromohalobacter salexigens 40a_TX [QGTY]
108449
108373
-
Asp
GTC
[ENA]
¡û
>W1810624133
QHGY01000002
Gammaproteobacteria
Halomonas lactosivorans KCTC 52281 [QHGY]
494673
494749
+
Asp
GTC
[ENA]
¡û
>W1810624134
QHGY01000002
Gammaproteobacteria
Halomonas lactosivorans KCTC 52281 [QHGY]
494778
494854
+
Asp
GTC
[ENA]
¡û
>W1810624135
QHGY01000002
Gammaproteobacteria
Halomonas lactosivorans KCTC 52281 [QHGY]
494883
494959
+
Asp
GTC
[ENA]
¡û
>W1810624137
QHGY01000002
Gammaproteobacteria
Halomonas lactosivorans KCTC 52281 [QHGY]
495112
495188
+
Asp
GTC
[ENA]
¡û
>W1510018778
BBUL01000087
Gammaproteobacteria
Cellvibrio sp. OA-2007 [BBUL]
97554
97630
+
Asp
GTC
[ENA]
¡û
>W1510018804
BBUL01000097
Gammaproteobacteria
Cellvibrio sp. OA-2007 [BBUL]
330678
330602
-
Asp
GTC
[ENA]
¡û
>W1511319668
JPZL01000001
Gammaproteobacteria
Halomonas xinjiangensis TRM 0175 [JPZL]
1353177
1353101
-
Asp
GTC
[ENA]
¡û
>W1511319669
JPZL01000001
Gammaproteobacteria
Halomonas xinjiangensis TRM 0175 [JPZL]
1353002
1352926
-
Asp
GTC
[ENA]
¡û
>W1511319671
JPZL01000001
Gammaproteobacteria
Halomonas xinjiangensis TRM 0175 [JPZL]
1352801
1352725
-
Asp
GTC
[ENA]
¡û
>W1511334709
JQNW01000001
Gammaproteobacteria
Chromohalobacter israelensis 6768 [JQNW]
987291
987215
-
Asp
GTC
[ENA]
¡û
>W121123973
BAEU01000154
Gammaproteobacteria
Halomonas sp. KM-1 [BAEU]
76201
76125
-
Asp
GTC
[ENA]
¡û
>W121123974
BAEU01000154
Gammaproteobacteria
Halomonas sp. KM-1 [BAEU]
76098
76022
-
Asp
GTC
[ENA]
¡û
>W121123976
BAEU01000154
Gammaproteobacteria
Halomonas sp. KM-1 [BAEU]
75901
75825
-
Asp
GTC
[ENA]
¡û
>W1610905975
LSBP01000001
Gammaproteobacteria
Halomonadaceae bacterium T82-2 [LSBP]
193352
193276
-
Asp
GTC
[ENA]
¡û
>W1610905976
LSBP01000001
Gammaproteobacteria
Halomonadaceae bacterium T82-2 [LSBP]
193192
193116
-
Asp
GTC
[ENA]
¡û
>W1610905978
LSBP01000001
Gammaproteobacteria
Halomonadaceae bacterium T82-2 [LSBP]
193004
192928
-
Asp
GTC
[ENA]
¡û
>W1610935903
LUKQ01000944
Gammaproteobacteria
Endozoicomonas atrinae [LUKQ]
11814
11890
+
Asp
GTC
[ENA]
¡û
>W1610935904
LUKQ01000944
Gammaproteobacteria
Endozoicomonas atrinae [LUKQ]
12013
12089
+
Asp
GTC
[ENA]
¡û
>W1710519416
FNES01000005
Gammaproteobacteria
Halomonas gudaonensis [FNES]
112160
112084
-
Asp
GTC
[ENA]
¡û
>W1710519418
FNES01000005
Gammaproteobacteria
Halomonas gudaonensis [FNES]
111977
111901
-
Asp
GTC
[ENA]
¡û
>W1710539146
FNVC01000005
Gammaproteobacteria
Halomonas desiderata daqingensis [FNVC]
158029
158105
+
Asp
GTC
[ENA]
¡û
>W1710539147
FNVC01000005
Gammaproteobacteria
Halomonas desiderata daqingensis [FNVC]
158134
158210
+
Asp
GTC
[ENA]
¡û
>W1710539149
FNVC01000005
Gammaproteobacteria
Halomonas desiderata daqingensis [FNVC]
158341
158417
+
Asp
GTC
[ENA]
¡û
>W1710563798
FOPY01000012
Gammaproteobacteria
Halomonas xianhensis [FOPY]
71080
71004
-
Asp
GTC
[ENA]
¡û
>W1710563800
FOPY01000012
Gammaproteobacteria
Halomonas xianhensis [FOPY]
70892
70816
-
Asp
GTC
[ENA]
¡û
>W1710578479
FPBP01000010
Gammaproteobacteria
Halomonas korlensis [FPBP]
90539
90463
-
Asp
GTC
[ENA]
¡û
>W1710578481
FPBP01000010
Gammaproteobacteria
Halomonas korlensis [FPBP]
90318
90242
-
Asp
GTC
[ENA]
¡û
>W1710582913
FQUJ01000003
Gammaproteobacteria
Halomonas ilicicola DSM 19980 [FQUJ]
157836
157760
-
Asp
GTC
[ENA]
¡û
>W1710582914
FQUJ01000003
Gammaproteobacteria
Halomonas ilicicola DSM 19980 [FQUJ]
157674
157598
-
Asp
GTC
[ENA]
¡û
>W1710582916
FQUJ01000003
Gammaproteobacteria
Halomonas ilicicola DSM 19980 [FQUJ]
157480
157404
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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