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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275560 (111 seq.)
>W1710890986
LNCI01000019
Alphaproteobacteria
Tropicimonas marinistellae SF-16 [LNCI]
1650
1574
-
Arg
ACG
[ENA]
¡û
>W1710922261
LOAS01000010
Alphaproteobacteria
Aliiruegeria sabulilitoris [LOAS]
147968
147892
-
Arg
ACG
[ENA]
¡û
>W1711054823
LRUC01000029
Alphaproteobacteria
Celeribacter ethanolicus NH195 [LRUC]
46526
46602
+
Arg
ACG
[ENA]
¡û
>W1711126405
LUOO01000013
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
52377
52301
-
Arg
ACG
[ENA]
¡û
>W1711126452
LUOP01000011
Alphaproteobacteria
Maritimibacter sp. REDSEA-S40_B3 [LUOP]
335238
335314
+
Arg
ACG
[ENA]
¡û
>W131164657
ARAY01000021
Alphaproteobacteria
Wenxinia marina DSM 24838 [ARAY]
66589
66665
+
Arg
ACG
[ENA]
¡û
>W131242004
BASI01000001
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [BASI]
192897
192821
-
Arg
ACG
[ENA]
¡û
>W1711572386
MNBL01000039
Alphaproteobacteria
Nioella sediminis JS7-11 [MNBL]
6259
6183
-
Arg
ACG
[ENA]
¡û
>W1711572431
MNBW01000003
Alphaproteobacteria
Nioella nitratireducens [MNBW]
124425
124501
+
Arg
ACG
[ENA]
¡û
>W1711709180
MSYP01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYP]
791434
791510
+
Arg
ACG
[ENA]
¡û
>W1711709225
MSYQ01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYQ]
1015613
1015689
+
Arg
ACG
[ENA]
¡û
>W1711709275
MSYR01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYR]
3806255
3806331
+
Arg
ACG
[ENA]
¡û
>W1711712872
MTCO01000292
Alphaproteobacteria
Brevirhabdus pacifica [MTCO]
32199
32275
+
Arg
ACG
[ENA]
¡û
>WENV011386
AACY020309883
Marine microbial communities from Global Ocean Sampling (GOS)
2414
2336
-
Arg
ACG
[ENA]
>C171035313
CP015039
Alphaproteobacteria
Rhodovulum sp. P5 [CP015039]
2700385
2700309
-
Arg
ACG
-
¡û
>C171105920
CP020384
Alphaproteobacteria
Rhodovulum sp. MB263 [CP020384]
3443122
3443046
-
Arg
ACG
-
¡û
>w014839
AAOT01000004
Alphaproteobacteria
Oceanicola granulosus HTCC2516 [AAOT]
154675
154597
-
Arg
ACG
[ENA]
¡û
>w012780
AAMT01000006
Alphaproteobacteria
Maritimibacter alkaliphilus HTCC2654 [AAMT]
97636
97558
-
Arg
ACG
[ENA]
¡û
>WENV180364073
OBNZ01073519
[OBNZ] marine metagenome; ENVO:00002010
298
374
+
Arg
ACG
[ENA]
¢þ
>W141055102
AOLV01000028
Alphaproteobacteria
Rubellimicrobium thermophilum DSM 16684 [AOLV]
131905
131981
+
Arg
ACG
[ENA]
¡û
>W141055371
AONI01000015
Alphaproteobacteria
Litoreibacter arenae DSM 19593 [AONI]
21713
21637
-
Arg
ACG
[ENA]
¡û
>W141055762
AOSK01000041
Alphaproteobacteria
Rubellimicrobium mesophilum DSM 19309 [AOSK]
212331
212255
-
Arg
ACG
[ENA]
¡û
>WENV180595292
OCPD01000974
[OCPD] marine metagenome; Mesotrophic water
80
4
-
Arg
ACG
[ENA]
¢þ
>W141065772
AQQY01000002
Alphaproteobacteria
Actibacterium atlanticum 22II-S11-z10 [AQQY]
51990
52066
+
Arg
ACG
[ENA]
¡û
>WENV181320861
OFKI01037742
[OFKI] marine metagenome; seawater
313
237
-
Arg
ACG
[ENA]
¢þ
>WENV181412160
OGCI01090045
[OGCI] hot springs metagenome; Hot spring water
436
512
+
Arg
ACG
[ENA]
¢þ
>WENV182560691
OJDU01025606
[OJDU] seawater metagenome; Sea water
65
141
+
Arg
ACG
[ENA]
¢þ
>WENV183514330
OMKS01016299
[OMKS] sediment metagenome; hot spring sediment
3529
3605
+
Arg
ACG
[ENA]
¢þ
>WENV183713497
PDWI01141036
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
21
97
+
Arg
ACG
[ENA]
¢þ
>WENV183715267
PDWI01230390
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1173
1097
-
Arg
ACG
[ENA]
¢þ
>WENV183717061
PDWJ01000421
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
34374
34298
-
Arg
ACG
[ENA]
¢þ
>WENV183717651
PDWJ01001320
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
30828
30752
-
Arg
ACG
[ENA]
¢þ
>WENV183748233
PPFU01020914
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1506
1582
+
Arg
ACG
[ENA]
¢þ
>WENV170152305
CEOE01081576
[CEOE] marine metagenome genome assembly TARA_025_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
114
190
+
Arg
ACG
[ENA]
¢þ
>WENV170228831
CEQG01046088
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1855
1779
-
Arg
ACG
[ENA]
¢þ
>WENV170304505
CESI01050106
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
936
1012
+
Arg
ACG
[ENA]
¢þ
>WENV170327296
CESU01063709
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2955
3031
+
Arg
ACG
[ENA]
¢þ
>WENV170634390
FYBJ01000824
[FYBJ] marine metagenome; marine
7037
6961
-
Arg
ACG
[ENA]
¢þ
>WENV170727351
LULE01000003
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
335238
335314
+
Arg
ACG
[ENA]
¢þ
>WENV170734917
LULK01030509
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
694
770
+
Arg
ACG
[ENA]
¢þ
>WENV170739247
LULQ01000045
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
52377
52301
-
Arg
ACG
[ENA]
¢þ
>WENV170806821
MDSW01087763
[MDSW] marine metagenome; seawater
34403
34479
+
Arg
ACG
[ENA]
¢þ
>WENV170816506
MDSX01031429
[MDSX] marine metagenome; seawater
2039
2115
+
Arg
ACG
[ENA]
¢þ
>WENV170819190
MDSX01087820
[MDSX] marine metagenome; seawater
350
274
-
Arg
ACG
[ENA]
¢þ
>WENV170819303
MDSX01090088
[MDSX] marine metagenome; seawater
2720
2644
-
Arg
ACG
[ENA]
¢þ
>WENV170821478
MDSY01022775
[MDSY] marine metagenome; seawater
2526
2602
+
Arg
ACG
[ENA]
¢þ
>W141464086
JFKE01000006
Alphaproteobacteria
Actibacterium mucosum KCTC 23349 [JFKE]
176403
176327
-
Arg
ACG
[ENA]
¡û
>C181060575
CP022196
Alphaproteobacteria
Celeribacter ethanolicus TSPH2 [CP022196]
3113062
3113138
+
Arg
ACG
-
¡û
>C191127862
CP034588
Alphaproteobacteria
Silicimonas algicola KC90 [CP034588]
4044435
4044359
-
Arg
ACG
-
¡û
>C191184431
CP040932
Alphaproteobacteria
Oceanicola sp. D3 [CP040932]
544955
544879
-
Arg
ACG
-
¡û
>W141820538
JQMY01000001
Alphaproteobacteria
Oceanicola sp. MCTG156(1a) [JQMY]
1016877
1016953
+
Arg
ACG
[ENA]
¡û
>W1910499080
FXXQ01000016
Alphaproteobacteria
Boseongicola aestuarii CECT 8489 [FXXQ]
7879
7803
-
Arg
ACG
[ENA]
¡û
>W1910499714
FXYE01000001
Alphaproteobacteria
Actibacterium lipolyticum CECT 8621 [FXYE]
222165
222241
+
Arg
ACG
[ENA]
¡û
>W1910549007
FZOY01000004
Alphaproteobacteria
Tropicimonas sediminicola DSM 29339 [FZOY]
164781
164705
-
Arg
ACG
[ENA]
¡û
>W1910549351
FZPF01000005
Alphaproteobacteria
Jannaschia aquimarina DSM 28248 [FZPF]
165955
165879
-
Arg
ACG
[ENA]
¡û
>W1910584234
JXTF01000038
Alphaproteobacteria
Roseovarius sp. JS7-11 [JXTF]
6259
6183
-
Arg
ACG
[ENA]
¡û
>W1910808413
MUAV01000032
Alphaproteobacteria
Rhodovulum viride JA756 [MUAV]
24416
24492
+
Arg
ACG
[ENA]
¡û
>W1911081225
NMZM01000006
Alphaproteobacteria
Oceaniglobus indicus 1-19b [NMZM]
231634
231710
+
Arg
ACG
[ENA]
¡û
>W1911237151
NSBT01000011
Alphaproteobacteria
Actibacterium ureilyticum LS-811 [NSBT]
16893
16817
-
Arg
ACG
[ENA]
¡û
>W1911653461
QDFI01000014
Alphaproteobacteria
Phycocomes zhengii LMIT002 [QDFI]
54542
54618
+
Arg
ACG
[ENA]
¡û
>W1911696575
QMEK01000006
Alphaproteobacteria
Tropicimonas sp. IMCC34043 [QMEK]
165737
165813
+
Arg
ACG
[ENA]
¡û
>W1911747136
QWDA01000002
Alphaproteobacteria
Paracoccaceae bacterium IMCC 34051 [QWDA]
113607
113683
+
Arg
ACG
[ENA]
¡û
>W1810090259
PGFI01000011
Alphaproteobacteria
Brevirhabdus pacifica DSM 27767 [PGFI]
172919
172843
-
Arg
ACG
[ENA]
¡û
>W1810364348
PVTD01000010
Alphaproteobacteria
Aliiruegeria haliotis DSM 29328 [PVTD]
1721
1645
-
Arg
ACG
[ENA]
¡û
>W1810464054
QAAA01000033
Alphaproteobacteria
Rhodovulum imhoffii DSM 18064 [QAAA]
216
140
-
Arg
ACG
[ENA]
¡û
>W1810471809
QAGK01000023
Alphaproteobacteria
Oceaniglobus ichthyenteri YLY08 [QAGK]
768
692
-
Arg
ACG
[ENA]
¡û
>W1810476791
QAOH01000001
Alphaproteobacteria
Celeribacter persicus DSM 100434 [QAOH]
538008
537932
-
Arg
ACG
[ENA]
¡û
>W1810486778
QAYC01000024
Alphaproteobacteria
Rhodovulum kholense DSM 19783 [QAYC]
408
332
-
Arg
ACG
[ENA]
¡û
>W1810504250
QBKS01000002
Alphaproteobacteria
Litoreibacter ponti DSM 100977 [QBKS]
544241
544165
-
Arg
ACG
[ENA]
¡û
>W1810504503
QBKZ01000001
Alphaproteobacteria
Mangrovicoccus ximenensis T1lg56 [QBKZ]
485968
485892
-
Arg
ACG
[ENA]
¡û
>W1810594700
QGDJ01000002
Alphaproteobacteria
Jannaschia seohaensis DSM 25227 [QGDJ]
172131
172055
-
Arg
ACG
[ENA]
¡û
>W1810596862
QGGV01000009
Alphaproteobacteria
Silicimonas algicola DSM 103371 [QGGV]
44733
44809
+
Arg
ACG
[ENA]
¡û
>W1810603235
QGKU01000044
Alphaproteobacteria
Meridianimarinicoccus roseus TG-679 [QGKU]
41253
41329
+
Arg
ACG
[ENA]
¡û
>W1810722972
QNVX01000020
Alphaproteobacteria
Rhodovulum sp. BSW8 [QNVX]
8339
8263
-
Arg
ACG
[ENA]
¡û
>W1810761111
QPLJ01000015
Alphaproteobacteria
Jannaschia formosa 12N15 [QPLJ]
106336
106412
+
Arg
ACG
[ENA]
¡û
>C151006744
CP004393
Alphaproteobacteria
Celeribacter indicus P73 [CP004393]
696935
697011
+
Arg
ACG
[Ensembl]
¡û
>W1511325043
JQFU01000067
Alphaproteobacteria
Rhodovulum sp. NI22 [JQFU]
7273
7349
+
Arg
ACG
[ENA]
¡û
>W1511524535
JYFE01000008
Alphaproteobacteria
Jannaschia aquimarina GSW-M26 [JYFE]
24569
24645
+
Arg
ACG
[ENA]
¡û
>C161001463
AP014800
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 2351 [AP014800]
3610891
3610815
-
Arg
ACG
[Ensembl]
¡û
>WENV055939
AACY023244403
Marine microbial communities from Global Ocean Sampling (GOS)
374
296
-
Arg
ACG
[ENA]
>C161029308
CP010869
Alphaproteobacteria
Actibacterium sp. EMB200-NS6 [CP010869]
437045
437121
+
Arg
ACG
[Ensembl]
¡û
>C161087753
CP015418
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [CP015418]
198659
198583
-
Arg
ACG
-
¡û
>C161087802
CP015421
Alphaproteobacteria
Rhodovulum sulfidophilum SNK001 [CP015421]
192896
192820
-
Arg
ACG
[Ensembl]
¡û
>W1610014741
AONG01000010
Alphaproteobacteria
Wenxinia marina DSM 24838 [AONG]
178104
178028
-
Arg
ACG
[ENA]
¡û
>W1610091963
CXPG01000020
Alphaproteobacteria
Jannaschia rubra [CXPG]
727874
727950
+
Arg
ACG
[ENA]
¡û
>W1610092039
CXSU01000012
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
198941
199017
+
Arg
ACG
[ENA]
¡û
>W1610092502
CYPR01000229
Alphaproteobacteria
Jannaschia seosinensis [CYPR]
27149
27225
+
Arg
ACG
[ENA]
¡û
>W1610751382
LNCI01000019
Alphaproteobacteria
Tropicimonas marinistellae SF-16 [LNCI]
1650
1574
-
Arg
ACG
[ENA]
¡û
>W1610779740
LOAS01000010
Alphaproteobacteria
Aliiruegeria sabulilitoris [LOAS]
147968
147892
-
Arg
ACG
[ENA]
¡û
>W1610895869
LRUC01000029
Alphaproteobacteria
Celeribacter ethanolicus NH195 [LRUC]
46526
46602
+
Arg
ACG
[ENA]
¡û
>W1610937338
LUOO01000013
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
52377
52301
-
Arg
ACG
[ENA]
¡û
>W1610937385
LUOP01000011
Alphaproteobacteria
Maritimibacter sp. REDSEA-S40_B3 [LUOP]
335238
335314
+
Arg
ACG
[ENA]
¡û
>W1710011632
AONG01000010
Alphaproteobacteria
Wenxinia marina DSM 24838 [AONG]
178104
178028
-
Arg
ACG
[ENA]
¡û
>W1710015552
AQQT01000008
Alphaproteobacteria
Loktanella sp. 22II-4b [AQQT]
25294
25218
-
Arg
ACG
[ENA]
¡û
>W1710095320
CXPG01000020
Alphaproteobacteria
Jannaschia rubra [CXPG]
727874
727950
+
Arg
ACG
[ENA]
¡û
>W1710095396
CXSU01000012
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
198941
199017
+
Arg
ACG
[ENA]
¡û
>W1710095757
CYPR01000229
Alphaproteobacteria
Jannaschia seosinensis [CYPR]
27149
27225
+
Arg
ACG
[ENA]
¡û
>W1710519021
FNEK01000075
Alphaproteobacteria
Aliiruegeria lutimaris [FNEK]
19846
19770
-
Arg
ACG
[ENA]
¡û
>W1710529327
FNNW01000011
Alphaproteobacteria
Celeribacter indicus [FNNW]
66496
66572
+
Arg
ACG
[ENA]
¡û
>W1710529867
FNOI01000004
Alphaproteobacteria
Litoreibacter albidus [FNOI]
285673
285597
-
Arg
ACG
[ENA]
¡û
>W1710531906
FNPX01000002
Alphaproteobacteria
Jannaschia faecimaris [FNPX]
1117
1041
-
Arg
ACG
[ENA]
¡û
>W1710543097
FNZQ01000005
Alphaproteobacteria
Jannaschia helgolandensis [FNZQ]
49917
49993
+
Arg
ACG
[ENA]
¡û
>W1710557748
FOLG01000031
Alphaproteobacteria
Tropicimonas isoalkanivorans [FOLG]
1781
1705
-
Arg
ACG
[ENA]
¡û
>W1710562109
FOOS01000002
Alphaproteobacteria
Jannaschia rubra [FOOS]
726920
726996
+
Arg
ACG
[ENA]
¡û
>W1710565154
FORA01000002
Alphaproteobacteria
Jannaschia pohangensis [FORA]
56663
56587
-
Arg
ACG
[ENA]
¡û
>W1710565564
FORH01000003
Alphaproteobacteria
Celeribacter neptunius [FORH]
404883
404807
-
Arg
ACG
[ENA]
¡û
>W1710574848
FOYO01000001
Alphaproteobacteria
Litoreibacter janthinus [FOYO]
3524525
3524449
-
Arg
ACG
[ENA]
¡û
>W1710583495
FQUV01000003
Alphaproteobacteria
Litoreibacter ascidiaceicola [FQUV]
251681
251757
+
Arg
ACG
[ENA]
¡û
>W1710587505
FQYO01000003
Alphaproteobacteria
Wenxinia saemankumensis [FQYO]
294944
294868
-
Arg
ACG
[ENA]
¡û
>W1710595098
FSRS01000001
Alphaproteobacteria
Rhodovulum sp. ES.010 [FSRS]
2065763
2065839
+
Arg
ACG
[ENA]
¡û
>W1710609081
FXBQ01000001
Alphaproteobacteria
Maritimibacter sp. HL-12 [FXBQ]
2164689
2164765
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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