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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275641 (22 seq.)
>W1711434418
MIMZ01000012
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
83088
83164
+
Met
CAT
[ENA]
¡û
>C171101770
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
1630686
1630762
+
Met
CAT
-
¡û
>WENV180176393
OAWD01000081
[OAWD] human gut metagenome; faeces
24647
24723
+
fMet
CAT
[ENA]
¢þ
>WENV180498289
OCAG01000047
[OCAG] human gut metagenome; faeces
41574
41650
+
fMet
CAT
[ENA]
¢þ
>WENV180765455
ODIC01000001
[ODIC] human metagenome; G_DNA_R_Retroauricular crease
292538
292462
-
fMet
CAT
[ENA]
¢þ
>WENV180766355
ODIE01019914
[ODIE] human metagenome; G_DNA_Anterior nares
79
155
+
fMet
CAT
[ENA]
¢þ
>WENV181010201
ODWG01010483
[ODWG] human metagenome; G_DNA_Anterior nares
120
196
+
fMet
CAT
[ENA]
¢þ
>WENV181865728
OGWU01082626
[OGWU] human gut metagenome; faeces
259
335
+
fMet
CAT
[ENA]
¢þ
>WENV182403342
OIET01003096
[OIET] human gut metagenome; human gut
2124
2200
+
fMet
CAT
[ENA]
¢þ
>WENV182405378
OIEV01003662
[OIEV] human gut metagenome; human gut
2425
2501
+
fMet
CAT
[ENA]
¢þ
>WENV182642335
OJLM01001299
[OJLM] metagenome; surface
402
326
-
fMet
CAT
[ENA]
¢þ
>WENV182646096
OJMA01000001
[OJMA] metagenome; surface
273089
273165
+
fMet
CAT
[ENA]
¢þ
>C191064444
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
1902228
1902152
-
Met
CAT
-
¡û
>C191219527
LR215983
Bacillota
Eubacterium limosum [LR215983]
3151420
3151344
-
Met
CAT
-
¡û
>W1810609761
QGUD01000010
Bacillota
Eubacterium limosum 8486cho [QGUD]
70932
70856
-
Met
CAT
[ENA]
¡û
>W1810871742
QUDF01000012
Bacillota
Eubacterium sp. AM05-23 [QUDF]
83635
83711
+
Met
CAT
[ENA]
¡û
>C11108831
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
3491212
3491136
-
Met
CAT
[Ensembl]
¡û
>W1511480158
JWIS01000010
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
621605
621529
-
Met
CAT
[ENA]
¡û
>C161037780
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
824805
824881
+
Met
CAT
[Ensembl]
¡û
>W1710525036
FNJF01000009
Bacillota
Eubacterium maltosivorans limosum [FNJF]
59910
59986
+
Met
CAT
[ENA]
¡û
>W1710571966
FOWI01000005
Bacillota
Eubacterium callanderi [FOWI]
53213
53289
+
Met
CAT
[ENA]
¡û
>W1710591266
FRBP01000001
Bacillota
Eubacterium callanderi [FRBP]
368065
367989
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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