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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275671 (38 seq.)
>W1710796572
LJSF01000014
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA08 [LJSF]
155723
155647
-
Arg
ACG
[ENA]
¡û
>W1711229278
LXYH01000009
Alphaproteobacteria
Rhodobacteraceae bacterium EhC02 [LXYH]
9590
9514
-
Arg
ACG
[ENA]
¡û
>W1711272862
LZFQ01000034
Alphaproteobacteria
Donghicola sp. JL3646 [LZFQ]
372193
372117
-
Arg
ACG
[ENA]
¡û
>W1711704515
MSPP01000002
Alphaproteobacteria
Marivivens niveibacter MCCC 1A06712 [MSPP]
4166
4090
-
Arg
ACG
[ENA]
¡û
>C171064548
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
2721286
2721210
-
Arg
ACG
-
¡û
>C171081183
CP018572
Alphaproteobacteria
Marivivens sp. JLT3646 [CP018572]
277220
277296
+
Arg
ACG
-
¡û
>C171101157
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
2159222
2159146
-
Arg
ACG
-
¡û
>W131155840
AQOX01000002
Alphaproteobacteria
Limimaricola hongkongensis DSM 17492 [AQOX]
490014
490090
+
Arg
ACG
[ENA]
¡û
>WENV180103453
OAPA01041304
[OAPA] marine metagenome; ENVO:00002010
330
406
+
Arg
ACG
[ENA]
¢þ
>W141063298
APGJ01000002
Alphaproteobacteria
Limimaricola hongkongensis DSM 17492 [APGJ]
20263
20187
-
Arg
ACG
[ENA]
¡û
>WENV181120528
OEFK01008125
[OEFK] marine metagenome; ENVO:00002010 seawater
637
713
+
Arg
ACG
[ENA]
¢þ
>WENV181234541
OFEU01000314
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
8315
8239
-
Arg
ACG
[ENA]
¢þ
>W141230430
BATB01000011
Alphaproteobacteria
Limimaricola cinnabarinus LL-001 [BATB]
31966
31890
-
Arg
ACG
[ENA]
¡û
>WENV182593001
OJIS01006126
[OJIS] seawater metagenome; Sea water
2136
2060
-
Arg
ACG
[ENA]
¢þ
>W141278740
JAFT01000005
Alphaproteobacteria
Oceanicola sp. HL-35 [JAFT]
605512
605436
-
Arg
ACG
[ENA]
¡û
>WENV170136174
CENV01008971
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
306
382
+
Arg
ACG
[ENA]
¢þ
>WENV170276813
CERO01033491
[CERO] marine metagenome genome assembly TARA_068_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
489
565
+
Arg
ACG
[ENA]
¢þ
>C181049339
CP021114
Alphaproteobacteria
Aestuarium zhoushanense G7 [CP021114]
235392
235468
+
Arg
ACG
-
¡û
>W1910442941
FWFQ01000011
Alphaproteobacteria
Pseudoruegeria aquimaris CECT 7680 [FWFQ]
60308
60232
-
Arg
ACG
[ENA]
¡û
>W1910443281
FWFY01000002
Alphaproteobacteria
Limimaricola soesokkakensis CECT 8367 [FWFY]
27085
27009
-
Arg
ACG
[ENA]
¡û
>W1911189718
NQWH01000018
Alphaproteobacteria
Limimaricola cinnabarinus XM1 [NQWH]
26930
26854
-
Arg
ACG
[ENA]
¡û
>W1810116071
PHNO01000670
Alphaproteobacteria
Amaricoccus sp. HAR-UPW-R2A-40 [PHNO]
919
843
-
Arg
ACG
[ENA]
¡û
>W1810400363
PYGB01000001
Alphaproteobacteria
Limimaricola soesokkakensis DSM 29956 [PYGB]
516107
516183
+
Arg
ACG
[ENA]
¡û
>W1810672100
QJTE01000003
Alphaproteobacteria
Pseudoroseicyclus aestuarii CECT 9025 [QJTE]
141503
141579
+
Arg
ACG
[ENA]
¡û
>W1810679193
QKPN01000003
Alphaproteobacteria
Rhodobacteraceae bacterium DSL-40 [QKPN]
200238
200314
+
Arg
ACG
[ENA]
¡û
>C11111828
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
2177801
2177725
-
Arg
ACG
[Ensembl]
¡û
>C11111880
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
2464015
2463939
-
Arg
ACG
[Ensembl]
¡û
>C161047272
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
2568304
2568228
-
Arg
ACG
-
¡û
>C161099999
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
2567208
2567132
-
Arg
ACG
-
¡û
>W1610660529
LJSF01000014
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA08 [LJSF]
155723
155647
-
Arg
ACG
[ENA]
¡û
>W1611013148
LXYH01000009
Alphaproteobacteria
Rhodobacteraceae bacterium EhC02 [LXYH]
9590
9514
-
Arg
ACG
[ENA]
¡û
>W1611032211
LZFQ01000034
Alphaproteobacteria
Donghicola sp. JL3646 [LZFQ]
372193
372117
-
Arg
ACG
[ENA]
¡û
>W1710514215
FNAT01000014
Alphaproteobacteria
Limimaricola pyoseonensis [FNAT]
12717
12641
-
Arg
ACG
[ENA]
¡û
>W1710518521
FNEB01000009
Alphaproteobacteria
Lutimaribacter saemankumensis [FNEB]
47445
47521
+
Arg
ACG
[ENA]
¡û
>W1710524246
FNIO01000007
Alphaproteobacteria
Lutimaribacter pacificus [FNIO]
41638
41714
+
Arg
ACG
[ENA]
¡û
>W1710574560
FOYI01000004
Alphaproteobacteria
Poseidonocella sedimentorum [FOYI]
134535
134459
-
Arg
ACG
[ENA]
¡û
>W1710589258
FQZZ01000008
Alphaproteobacteria
Lutimaribacter pacificus [FQZZ]
137111
137035
-
Arg
ACG
[ENA]
¡û
>W1710594790
FSRL01000002
Alphaproteobacteria
Vannielia litorea litoreus [FSRL]
56209
56285
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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