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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275720 (29 seq.)
>W1711632251
MPSI01000001
Gammaproteobacteria
Stenotrophomonas maltophilia [MPSI]
3175620
3175696
+
Arg
CCG
[ENA]
¡û
>C171040188
CP015612
Gammaproteobacteria
Stenotrophomonas maltophilia OUC_Est10 [CP015612]
4384424
4384500
+
Arg
CCG
-
¡û
>C171083078
CP018756
Gammaproteobacteria
Stenotrophomonas maltophilia AA1 [CP018756]
3912460
3912536
+
Arg
CCG
-
¡û
>W141258836
CBXW010000015
Gammaproteobacteria
Stenotrophomonas indicatrix SeITE02 [CBXW]
36391
36467
+
Arg
CCG
[ENA]
¡û
>WENV183730700
PJTS01000363
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
1415
1339
-
Arg
CCG
[ENA]
¢þ
>WENV183731804
PJTT01000195
[PJTT] soil metagenome; Soil (2) enriched on wood chips
30118
30042
-
Arg
CCG
[ENA]
¢þ
>WENV170706605
LNAP01004585
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
286
362
+
Arg
CCG
[ENA]
¢þ
>W141484538
JFYS01000023
Gammaproteobacteria
Stenotrophomonas sp. RIT309 [JFYS]
228828
228752
-
Arg
CCG
[ENA]
¡û
>C181078230
CP023271
Gammaproteobacteria
Stenotrophomonas sp. MYb57 [CP023271]
4403988
4404064
+
Arg
CCG
-
¡û
>C181156401
CP027562
Gammaproteobacteria
Stenotrophomonas maltophilia SJTH1 [CP027562]
4645784
4645860
+
Arg
CCG
-
¡û
>C191079505
CP031741
Gammaproteobacteria
Stenotrophomonas sp. G4 [CP031741]
4216282
4216358
+
Arg
CCG
-
¡û
>C191154183
CP037883
Gammaproteobacteria
Stenotrophomonas indicatrix DAIF1 [CP037883]
4356143
4356219
+
Arg
CCG
-
¡û
>W1910282589
FRDD01000030
Gammaproteobacteria
Xanthomonas retroflexus [FRDD]
45148
45224
+
Arg
CCG
[ENA]
¡û
>W1910549150
FZPB01000001
Gammaproteobacteria
Stenotrophomonas lactitubi YR347 [FZPB]
1984639
1984715
+
Arg
CCG
[ENA]
¡û
>W1910887077
NEQR01000004
Gammaproteobacteria
Stenotrophomonas maltophilia EP5 [NEQR]
1365597
1365673
+
Arg
CCG
[ENA]
¡û
>W1910887117
NEQS01000010
Gammaproteobacteria
Stenotrophomonas maltophilia EP20 [NEQS]
685700
685624
-
Arg
CCG
[ENA]
¡û
>W1910887274
NEQU01000004
Gammaproteobacteria
Stenotrophomonas maltophilia PS5 [NEQU]
1365597
1365673
+
Arg
CCG
[ENA]
¡û
>W1911719623
QQXJ01000001
Gammaproteobacteria
Stenotrophomonas sp. TEPEL [QQXJ]
234907
234831
-
Arg
CCG
[ENA]
¡û
>W1810078099
PEJS01000001
Gammaproteobacteria
Stenotrophomonas indicatrix WS40 [PEJS]
3916831
3916907
+
Arg
CCG
[ENA]
¡û
>W1810078150
PEJT01000005
Gammaproteobacteria
Stenotrophomonas sp. LMG 10879 LMG 10879 [PEJT]
135006
135082
+
Arg
CCG
[ENA]
¡û
>W1810078227
PEJU01000001
Gammaproteobacteria
Stenotrophomonas indicatrix LMG 29892 [PEJU]
3886761
3886837
+
Arg
CCG
[ENA]
¡û
>W1810101943
PGTW01000001
Gammaproteobacteria
Stenotrophomonas sp. YR399 [PGTW]
268549
268473
-
Arg
CCG
[ENA]
¡û
>W1810118687
PHQX01000001
Gammaproteobacteria
Stenotrophomonas lactitubi M15 [PHQX]
3982220
3982296
+
Arg
CCG
[ENA]
¡û
>W1810474537
QAIJ01000188
Gammaproteobacteria
Stenotrophomonas sp. HMWF023 [QAIJ]
4263
4187
-
Arg
CCG
[ENA]
¡û
>W1511469824
JVVX01000215
Gammaproteobacteria
Stenotrophomonas maltophilia 1275_SMAL [JVVX]
4555
4479
-
Arg
CCG
[ENA]
¡û
>W1610085691
CVIV01000052
Gammaproteobacteria
Stenotrophomonas indicatrix maltophilia [CVIV]
960
1036
+
Arg
CCG
[ENA]
¡û
>W1710090280
CVIV01000052
Gammaproteobacteria
Stenotrophomonas indicatrix maltophilia [CVIV]
960
1036
+
Arg
CCG
[ENA]
¡û
>W1710552823
FOHC01000007
Gammaproteobacteria
Stenotrophomonas indicatrix SC-N050 [FOHC]
111453
111529
+
Arg
CCG
[ENA]
¡û
>W1710605138
FWEU01000003
Gammaproteobacteria
Stenotrophomonas indicatrix 92mfcol6.1 [FWEU]
206481
206405
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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