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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275791 (96 seq.)
>W1711081192
LSRT01000370
Gammaproteobacteria
Marinobacter sp. T13-3 [LSRT]
2601
2525
-
Ile
GAT
[ENA]
¡û
>W1711228035
LXWE01000015
Gammaproteobacteria
Alteromonadaceae bacterium XY-R5 [LXWE]
3502
3426
-
Ile
GAT
[ENA]
¡û
>W1711356875
MDGT01000001
Gammaproteobacteria
Idiomarina sp. MD25a [MDGT]
194486
194410
-
Ile
GAT
[ENA]
¡û
>W1711690197
MSEI01000034
Gammaproteobacteria
Idiomarina sp. 5.13 [MSEI]
260
184
-
Ile
GAT
[ENA]
¡û
>W1712106985
NIWW01000016
Gammaproteobacteria
Lacimicrobium sp. SS2-24 [NIWW]
3586
3510
-
Ile
GAT
[ENA]
¡û
>W131045209
AMRG01000037
Gammaproteobacteria
Idiomarina xiamenensis 10-D-4 [AMRG]
293
217
-
Ile
GAT
[ENA]
¡û
>W131164573
ARAW01000036
Gammaproteobacteria
Fangia hongkongensis DSM 21703 [ARAW]
1
77
+
Ile
GAT
[ENA]
¡û
>w012967
AAMX01000060
Gammaproteobacteria
Idiomarina baltica OS145 [AAMX]
505
583
+
Ile
GAT
[ENA]
¡û
>w012965
AAMX01000051
Gammaproteobacteria
Idiomarina baltica OS145 [AAMX]
2563
2485
-
Ile
GAT
[ENA]
¡û
>WENV180346259
OBLN01049471
[OBLN] sediment metagenome; sediment
599
523
-
Ile
GAT
[ENA]
¢þ
>WENV181234122
OFET01005222
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
80
4
-
Ile
GAT
[ENA]
¢þ
>WENV181234761
OFEU01004605
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
383
307
-
Ile
GAT
[ENA]
¢þ
>WENV183062377
OLID01005616
[OLID] seawater metagenome; Sea water
172
248
+
Ile
GAT
[ENA]
¢þ
>WENV170194434
CEPJ01033399
[CEPJ] marine metagenome genome assembly TARA_048_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
109
185
+
Ile
GAT
[ENA]
¢þ
>WENV170335002
CESZ01024460
[CESZ] marine metagenome genome assembly TARA_078_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
111
187
+
Ile
GAT
[ENA]
¢þ
>WENV170444823
CEUY01005253
[CEUY] marine metagenome genome assembly TARA_123_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
110
186
+
Ile
GAT
[ENA]
¢þ
>WENV170655464
JTFN01034748
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
168
244
+
Ile
GAT
[ENA]
¢þ
>WENV170655875
JTFN01089436
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
7
83
+
Ile
GAT
[ENA]
¢þ
>WENV170656019
JTFN01115863
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
168
244
+
Ile
GAT
[ENA]
¢þ
>WENV170656775
JTFO01042645
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
168
244
+
Ile
GAT
[ENA]
¢þ
>WENV170657328
JTFO01126797
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
81
5
-
Ile
GAT
[ENA]
¢þ
>WENV170657340
JTFO01129300
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
7
83
+
Ile
GAT
[ENA]
¢þ
>WENV170658743
JTFP01199175
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
205
281
+
Ile
GAT
[ENA]
¢þ
>WENV170752977
LUMJ01009228
[LUMJ] marine metagenome; Red Sea water column Station 22 - depth 500m
283
359
+
Ile
GAT
[ENA]
¢þ
>WENV170779839
LZQR01001647
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
2583
2507
-
Ile
GAT
[ENA]
¢þ
>C181054053
CP021781
Gammaproteobacteria
Francisella adeliensis FDC440 [CP021781]
46890
46966
+
Ile
GAT
-
¡û
>C181054076
CP021781
Gammaproteobacteria
Francisella adeliensis FDC440 [CP021781]
1680249
1680173
-
Ile
GAT
-
¡û
>C181054086
CP021781
Gammaproteobacteria
Francisella adeliensis FDC440 [CP021781]
1258190
1258114
-
Ile
GAT
-
¡û
>C181146707
CP027188
Gammaproteobacteria
Idiomarina sp. OT37-5b [CP027188]
2839565
2839489
-
Ile
GAT
-
¡û
>C181146711
CP027188
Gammaproteobacteria
Idiomarina sp. OT37-5b [CP027188]
2521789
2521713
-
Ile
GAT
-
¡û
>C181146714
CP027188
Gammaproteobacteria
Idiomarina sp. OT37-5b [CP027188]
2122135
2122059
-
Ile
GAT
-
¡û
>C181146717
CP027188
Gammaproteobacteria
Idiomarina sp. OT37-5b [CP027188]
1991177
1991101
-
Ile
GAT
-
¡û
>W141802177
JPER01000013
Gammaproteobacteria
Pseudidiomarina salinarum [JPER]
3377
3301
-
Ile
GAT
[ENA]
¡û
>W1910584196
JXSY01000041
Gammaproteobacteria
Bowmanella sp. JS7-9 [JXSY]
3284
3208
-
Ile
GAT
[ENA]
¡û
>W1911584709
PIPI01000015
Gammaproteobacteria
Aliidiomarina haloalkalitolerans AK5 [PIPI]
1476
1552
+
Ile
GAT
[ENA]
¡û
>W1911584759
PIPJ01000031
Gammaproteobacteria
Aliidiomarina iranensis GBPy7 [PIPJ]
212
288
+
Ile
GAT
[ENA]
¡û
>W1911584761
PIPJ01000034
Gammaproteobacteria
Aliidiomarina iranensis GBPy7 [PIPJ]
696
620
-
Ile
GAT
[ENA]
¡û
>W1911584763
PIPJ01000036
Gammaproteobacteria
Aliidiomarina iranensis GBPy7 [PIPJ]
136
212
+
Ile
GAT
[ENA]
¡û
>W1911584817
PIPK01000043
Gammaproteobacteria
Aliidiomarina maris CF12-14 [PIPK]
640
564
-
Ile
GAT
[ENA]
¡û
>W1911584867
PIPL01000005
Gammaproteobacteria
Aliidiomarina minuta MLST1 [PIPL]
1794
1870
+
Ile
GAT
[ENA]
¡û
>W1911584917
PIPM01000047
Gammaproteobacteria
Aliidiomarina sanyensis GYP-17 [PIPM]
1
77
+
Ile
GAT
[ENA]
¡û
>W1911584968
PIPN01000008
Gammaproteobacteria
Aliidiomarina sedimenti GBSy1 [PIPN]
3376
3300
-
Ile
GAT
[ENA]
¡û
>W1911584969
PIPN01000010
Gammaproteobacteria
Aliidiomarina sedimenti GBSy1 [PIPN]
621
545
-
Ile
GAT
[ENA]
¡û
>W1911585020
PIPO01000010
Gammaproteobacteria
Aliidiomarina soli Y4G10-17 [PIPO]
815
739
-
Ile
GAT
[ENA]
¡û
>W1911585022
PIPO01000011
Gammaproteobacteria
Aliidiomarina soli Y4G10-17 [PIPO]
862
786
-
Ile
GAT
[ENA]
¡û
>W1911585072
PIPP01000012
Gammaproteobacteria
Aliidiomarina shirensis AIS [PIPP]
681
605
-
Ile
GAT
[ENA]
¡û
>W1911585074
PIPP01000013
Gammaproteobacteria
Aliidiomarina shirensis AIS [PIPP]
553
477
-
Ile
GAT
[ENA]
¡û
>W1911585076
PIPP01000015
Gammaproteobacteria
Aliidiomarina shirensis AIS [PIPP]
1
77
+
Ile
GAT
[ENA]
¡û
>W1911585222
PIPS01000007
Gammaproteobacteria
Idiomarina aquatica SN-14 [PIPS]
1765
1841
+
Ile
GAT
[ENA]
¡û
>W1911585467
PIPX01000006
Gammaproteobacteria
Pseudidiomarina homiensis PO-M2 [PIPX]
1693
1769
+
Ile
GAT
[ENA]
¡û
>W1911585517
PIPY01000016
Gammaproteobacteria
Pseudidiomarina insulisalsae CVS-6 [PIPY]
3390
3314
-
Ile
GAT
[ENA]
¡û
>W1911585569
PIPZ01000010
Gammaproteobacteria
Pseudidiomarina marina PIM1 [PIPZ]
472
396
-
Ile
GAT
[ENA]
¡û
>W1911585670
PIQB01000005
Gammaproteobacteria
Pseudidiomarina planktonica TS-T11 [PIQB]
3827
3751
-
Ile
GAT
[ENA]
¡û
>W1911585766
PIQD01000005
Gammaproteobacteria
Pseudidiomarina salinarum ISL-52 [PIQD]
1780
1856
+
Ile
GAT
[ENA]
¡û
>W1911585924
PIQH01000002
Gammaproteobacteria
Idiomarina tyrosinivorans CC-PW-9 [PIQH]
3338
3262
-
Ile
GAT
[ENA]
¡û
>W1911586013
PIQJ01000005
Gammaproteobacteria
Pseudidiomarina tainanensis PIN1 [PIQJ]
3397
3321
-
Ile
GAT
[ENA]
¡û
>W1911687750
QLIQ01000178
Gammaproteobacteria
Cysteiniphilum litorale DSM 101832 [QLIQ]
297
373
+
Ile
GAT
[ENA]
¡û
>W1911687752
QLIQ01000179
Gammaproteobacteria
Cysteiniphilum litorale DSM 101832 [QLIQ]
298
374
+
Ile
GAT
[ENA]
¡û
>W1911687790
QLIR01000036
Gammaproteobacteria
Fastidiosibacter lacustris NBRC 112274 [QLIR]
1819
1895
+
Ile
GAT
[ENA]
¡û
>W1911687848
QLIT01000111
Gammaproteobacteria
Facilibium subflavum SYSU SYW-5 [QLIT]
1865
1941
+
Ile
GAT
[ENA]
¡û
>W1911687902
QLIU01000060
Gammaproteobacteria
Cysteiniphilum halobium SYSU SYW-6 [QLIU]
182
258
+
Ile
GAT
[ENA]
¡û
>W1911687904
QLIU01000061
Gammaproteobacteria
Cysteiniphilum halobium SYSU SYW-6 [QLIU]
224
300
+
Ile
GAT
[ENA]
¡û
>W1810090431
PGGB01000016
Gammaproteobacteria
Caedibacter taeniospiralis 51K [PGGB]
43277
43201
-
Ile
GAT
[ENA]
¡û
>W1810090442
PGGB01000021
Gammaproteobacteria
Caedibacter taeniospiralis 51K [PGGB]
106534
106458
-
Ile
GAT
[ENA]
¡û
>W1810090445
PGGB01000023
Gammaproteobacteria
Caedibacter taeniospiralis 51K [PGGB]
2090
2166
+
Ile
GAT
[ENA]
¡û
>W1810425688
PYVF01000004
Gammaproteobacteria
Pseudidiomarina aestuarii A12-4 [PYVF]
12389
12465
+
Ile
GAT
[ENA]
¡û
>W1810425715
PYVG01000008
Gammaproteobacteria
Pseudidiomarina aestuarii A9-4 [PYVG]
14025
13949
-
Ile
GAT
[ENA]
¡û
>W1810425803
PYVM01000059
Gammaproteobacteria
Pseudidiomarina aestuarii Z-D7-3 [PYVM]
500
576
+
Ile
GAT
[ENA]
¡û
>W1810425834
PYVN01000095
Gammaproteobacteria
Pseudidiomarina aestuarii Z-D3-2 [PYVN]
482
406
-
Ile
GAT
[ENA]
¡û
>W1810425916
PYVR01000027
Gammaproteobacteria
Pseudidiomarina aestuarii Z-E7-4 [PYVR]
8116
8040
-
Ile
GAT
[ENA]
¡û
>W1810425923
PYVS01000020
Gammaproteobacteria
Pseudidiomarina aestuarii Z-E1-2 [PYVS]
2329
2253
-
Ile
GAT
[ENA]
¡û
>W1810609123
QGTT01000035
Gammaproteobacteria
Pseudidiomarina maritima 125B1 [QGTT]
1695
1771
+
Ile
GAT
[ENA]
¡û
>W1810694627
QLMD01000031
Gammaproteobacteria
Aliidiomarina maris CGMCC 1.15366 [QLMD]
1915
1991
+
Ile
GAT
[ENA]
¡û
>W1810705117
QMIL01000012
Gammaproteobacteria
Aliidiomarina celeris F3105 [QMIL]
221
297
+
Ile
GAT
[ENA]
¡û
>W1810705119
QMIL01000015
Gammaproteobacteria
Aliidiomarina celeris F3105 [QMIL]
279
355
+
Ile
GAT
[ENA]
¡û
>W1810705121
QMIL01000017
Gammaproteobacteria
Aliidiomarina celeris F3105 [QMIL]
35
111
+
Ile
GAT
[ENA]
¡û
>W1810706753
QMKJ01000007
Gammaproteobacteria
Aliidiomarina sp. B3213 [QMKJ]
204
280
+
Ile
GAT
[ENA]
¡û
>W1810706756
QMKJ01000011
Gammaproteobacteria
Aliidiomarina sp. B3213 [QMKJ]
167
243
+
Ile
GAT
[ENA]
¡û
>W1810706758
QMKJ01000032
Gammaproteobacteria
Aliidiomarina sp. B3213 [QMKJ]
202
126
-
Ile
GAT
[ENA]
¡û
>W1810721878
QNSG01000033
Gammaproteobacteria
Pseudidiomarina tainanensis 125Bg [QNSG]
3724
3648
-
Ile
GAT
[ENA]
¡û
>W1810758932
QPJA01000033
Gammaproteobacteria
Pseudidiomarina tainanensis 86_o [QPJA]
1695
1771
+
Ile
GAT
[ENA]
¡û
>W1510741101
CYHB01000014
Gammaproteobacteria
Pseudidiomarina woesei DSM 27808 [CYHB]
77
1
-
Ile
GAT
[ENA]
¡û
>C161058095
CP013650
Gammaproteobacteria
Lacimicrobium alkaliphilum YelD216 [CP013650]
529455
529531
+
Ile
GAT
[Ensembl]
¡û
>C161058128
CP013650
Gammaproteobacteria
Lacimicrobium alkaliphilum YelD216 [CP013650]
4228514
4228438
-
Ile
GAT
[Ensembl]
¡û
>C161058132
CP013650
Gammaproteobacteria
Lacimicrobium alkaliphilum YelD216 [CP013650]
2945932
2945856
-
Ile
GAT
[Ensembl]
¡û
>C161058134
CP013650
Gammaproteobacteria
Lacimicrobium alkaliphilum YelD216 [CP013650]
2746506
2746430
-
Ile
GAT
[Ensembl]
¡û
>C161107768
LN899469
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LN899469]
852663
852739
+
Ile
GAT
-
¡û
>C161107771
LN899469
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LN899469]
1241435
1241511
+
Ile
GAT
-
¡û
>C161107774
LN899469
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LN899469]
1469406
1469482
+
Ile
GAT
-
¡û
>C161107796
LN899469
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LN899469]
2553571
2553495
-
Ile
GAT
-
¡û
>W1610632494
LIPW01000014
Gammaproteobacteria
Pseudidiomarina woesei [LIPW]
77
1
-
Ile
GAT
[ENA]
¡û
>W1610919829
LSRT01000370
Gammaproteobacteria
Marinobacter sp. T13-3 [LSRT]
2601
2525
-
Ile
GAT
[ENA]
¡û
>W1611011999
LXWE01000015
Gammaproteobacteria
Alteromonadaceae bacterium XY-R5 [LXWE]
3502
3426
-
Ile
GAT
[ENA]
¡û
>W1710509892
FMXN01000015
Gammaproteobacteria
Pseudidiomarina indica [FMXN]
1897
1821
-
Ile
GAT
[ENA]
¡û
>W1710609279
FXWH01000005
Gammaproteobacteria
Pseudidiomarina planktonica [FXWH]
3826
3750
-
Ile
GAT
[ENA]
¡û
>W1710766880
LIPW01000014
Gammaproteobacteria
Pseudidiomarina woesei [LIPW]
77
1
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK