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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275909 (29 seq.)
>W1710989791
LPWD01000209
Alphaproteobacteria
Methyloceanibacter marginalis [LPWD]
15165
15089
-
Trp
CCA
[ENA]
¡û
>W1710989842
LPWE01000012
Alphaproteobacteria
Methyloceanibacter stevinii [LPWE]
297458
297382
-
Trp
CCA
[ENA]
¡û
>W1710989858
LPWF01000003
Alphaproteobacteria
Methyloceanibacter superfactus [LPWF]
42958
42882
-
Trp
CCA
[ENA]
¡û
>W1710989932
LPWG01000013
Alphaproteobacteria
Methyloceanibacter methanicus [LPWG]
269515
269591
+
Trp
CCA
[ENA]
¡û
>W1711312053
MASI01000001
Alphaproteobacteria
Methyloligella halotolerans [MASI]
101746
101822
+
Trp
CCA
[ENA]
¡û
>C171115927
CP021112
Alphaproteobacteria
Pseudorhodoplanes sinuspersici RIPI110 [CP021112]
4364692
4364768
+
Trp
CCA
-
¡û
>WENV180039203
LLBY010036551
[LLBY] soil metagenome; soil from tomato rhizosphere
53
129
+
Trp
CCA
[ENA]
¢þ
>WENV180257044
OBEQ010875247
[OBEQ] groundwater metagenome; groundwater
365
289
-
Trp
CCA
[ENA]
¢þ
>WENV180265535
OBEQ011667379
[OBEQ] groundwater metagenome; groundwater
795
871
+
Trp
CCA
[ENA]
¢þ
>WENV180291221
OBIV01021066
[OBIV] soil metagenome; Clay
400
324
-
Trp
CCA
[ENA]
¢þ
>WENV180690840
OCZS010028600
[OCZS] soil metagenome; soil
1185
1109
-
Trp
CCA
[ENA]
¢þ
>WENV181297990
OFHL01011442
[OFHL] soil metagenome; Clay
219
295
+
Trp
CCA
[ENA]
¢þ
>W141148470
AWXZ01000003
Alphaproteobacteria
Lutibaculum baratangense AMV1 [AWXZ]
17
93
+
Trp
CCA
[ENA]
¡û
>WENV183623203
OOFX01030436
[OOFX] marine metagenome; sea ice
500
576
+
Trp
CCA
[ENA]
¢þ
>WENV183724704
PJQE01052050
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
179
103
-
Trp
CCA
[ENA]
¢þ
>WENV170708280
LNAP01065155
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
983
1059
+
Trp
CCA
[ENA]
¢þ
>WENV170962430
MRWF01015659
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
241
317
+
Trp
CCA
[ENA]
¢þ
>WENV170963283
MRWG01000074
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
6792
6716
-
Trp
CCA
[ENA]
¢þ
>C181170877
CP028960
Alphaproteobacteria
Methyloceanibacter sp. wino2 [CP028960]
2973300
2973376
+
Trp
CCA
-
¡û
>C191005697
AP018907
Alphaproteobacteria
Blastochloris tepida GI [AP018907]
1935113
1935037
-
Trp
CCA
-
¡û
>W1911708756
QOZR01000024
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60014 [QOZR]
15581
15505
-
Trp
CCA
[ENA]
¡û
>W1810658593
QJJK01000006
Alphaproteobacteria
Chelatococcus asaccharovorans DSM 6462 [QJJK]
440027
439951
-
Trp
CCA
[ENA]
¡û
>C151002876
AP014648
Alphaproteobacteria
Methyloceanibacter caenitepidi Gela4 [AP014648]
2400351
2400275
-
Trp
CCA
[Ensembl]
¡û
>C161001656
AP014854
Alphaproteobacteria
Blastochloris viridis DSM 133 [AP014854]
3531938
3531862
-
Trp
CCA
[Ensembl]
¡û
>C161048006
CP012946
Alphaproteobacteria
Blastochloris viridis ATCC 19567 [CP012946]
1489250
1489326
+
Trp
CCA
-
¡û
>C161108073
LN907867
Alphaproteobacteria
Blastochloris viridis [LN907867]
889222
889298
+
Trp
CCA
[Ensembl]
¡û
>W1710527760
FNLG01000001
Alphaproteobacteria
Rhizobiales bacterium GAS113 [FNLG]
8881153
8881229
+
Trp
CCA
[ENA]
¡û
>W1710535706
FNSS01000001
Alphaproteobacteria
Rhizobiales bacterium GAS188 [FNSS]
2733381
2733305
-
Trp
CCA
[ENA]
¡û
>W1710535972
FNSX01000001
Alphaproteobacteria
Rhizobiales bacterium GAS191 [FNSX]
862278
862354
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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