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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275945 (100 seq.)
>W1710894071
LNFJ01000021
Bacteroidota
Bacteroidia bacterium Ga0077558 [LNFJ]
22351
22275
-
Asn
GTT
[ENA]
¡û
>W1711171998
LWBP01000254
Bacteroidota
Niastella populi [LWBP]
178339
178265
-
Asn
GTT
[ENA]
¡û
>W1711503750
MKTW01000018
Bacteroidota
Sphingobacteriales bacterium 44-61 [MKTW]
178164
178238
+
Asn
GTT
[ENA]
¡û
>W1711503816
MKTY01000020
Bacteroidota
Sphingobacteriales bacterium 46-32 [MKTY]
754376
754450
+
Asn
GTT
[ENA]
¡û
>W1711503847
MKTZ01000011
Bacteroidota
Sphingobacteriales bacterium 50-39 [MKTZ]
376109
376035
-
Asn
GTT
[ENA]
¡û
>W1711510307
MLAV01000070
Bacteroidota
Chitinophaga sp. CB10 [MLAV]
75
1
-
Asn
GTT
[ENA]
¡û
>WENV180024995
FTIL01013610
[FTIL] metagenome; soil
241
316
+
Asn
GTT
[ENA]
¢þ
>WENV180098007
MTBK01222869
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1714
1640
-
Asn
GTT
[ENA]
¢þ
>WENV180099398
NMRC01001636
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
75
1
-
Asn
GTT
[ENA]
¢þ
>WENV180283979
OBID01008602
[OBID] metagenome; sludge
634
560
-
Asn
GTT
[ENA]
¢þ
>WENV180296214
OBJA01000081
[OBJA] soil metagenome; sediment, water from around vicinity
27845
27769
-
Asn
GTT
[ENA]
¢þ
>WENV180315100
OBKH01018004
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
382
456
+
Asn
GTT
[ENA]
¢þ
>WENV181167499
OEIU01036356
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
702
776
+
Asn
GTT
[ENA]
¢þ
>WENV181230976
OFEK01006477
[OFEK] activated sludge metagenome; Anaerobic digester
4418
4344
-
Asn
GTT
[ENA]
¢þ
>WENV181231099
OFEK01009523
[OFEK] activated sludge metagenome; Anaerobic digester
5
79
+
Asn
GTT
[ENA]
¢þ
>WENV181307832
OFIS01000001
[OFIS] sludge metagenome; sludge
687664
687590
-
Asn
GTT
[ENA]
¢þ
>WENV181401817
OFTX01008437
[OFTX] sludge metagenome; sludge
1008
1082
+
Asn
GTT
[ENA]
¢þ
>WENV181402060
OFTY01000072
[OFTY] sludge metagenome; sludge
106783
106857
+
Asn
GTT
[ENA]
¢þ
>WENV181402113
OFTY01000127
[OFTY] sludge metagenome; sludge
73703
73777
+
Asn
GTT
[ENA]
¢þ
>WENV181402413
OFTY01001257
[OFTY] sludge metagenome; sludge
4146
4072
-
Asn
GTT
[ENA]
¢þ
>WENV181840750
OGVP01012844
[OGVP] freshwater metagenome; freshwater
565
641
+
Asn
GTT
[ENA]
¢þ
>WENV181845407
OGVX01002280
[OGVX] freshwater metagenome; freshwater
515
441
-
Asn
GTT
[ENA]
¢þ
>WENV181846943
OGVY01001208
[OGVY] freshwater metagenome; freshwater
3158
3234
+
Asn
GTT
[ENA]
¢þ
>WENV181847800
OGVZ01000125
[OGVZ] freshwater metagenome; freshwater
3219
3293
+
Asn
GTT
[ENA]
¢þ
>WENV181852717
OGWH01000898
[OGWH] freshwater metagenome; freshwater
4160
4084
-
Asn
GTT
[ENA]
¢þ
>WENV181854427
OGWK01002046
[OGWK] freshwater metagenome; freshwater
75
-1
-
Asn
GTT
[ENA]
¢þ
>C08000027
CP001102
Bacteroidota
Candidatus Amoebophilus asiaticus 5a2 [CP001102]
1408105
1408031
-
Asn
GTT
[Ensembl]
¡û
>WENV183515450
OMKS01064503
[OMKS] sediment metagenome; hot spring sediment
1037
1111
+
Asn
GTT
[ENA]
¢þ
>WENV183706601
PDWI01004795
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
90
16
-
Asn
GTT
[ENA]
¢þ
>WENV183713058
PDWI01122855
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
95
21
-
Asn
GTT
[ENA]
¢þ
>WENV183715123
PDWI01222332
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1126
1200
+
Asn
GTT
[ENA]
¢þ
>WENV183725837
PJQF01022841
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
63
137
+
Asn
GTT
[ENA]
¢þ
>WENV183728760
PJTQ01000411
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
25808
25882
+
Asn
GTT
[ENA]
¢þ
>WENV183729166
PJTQ01008004
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
19
93
+
Asn
GTT
[ENA]
¢þ
>WENV183729604
PJTQ01087849
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
10
84
+
Asn
GTT
[ENA]
¢þ
>WENV183731704
PJTT01000114
[PJTT] soil metagenome; Soil (2) enriched on wood chips
52339
52265
-
Asn
GTT
[ENA]
¢þ
>WENV183731749
PJTT01000148
[PJTT] soil metagenome; Soil (2) enriched on wood chips
312
238
-
Asn
GTT
[ENA]
¢þ
>WENV183737497
PJUD01010936
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
486
412
-
Asn
GTT
[ENA]
¢þ
>WENV183738250
PJUD01136562
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
8
82
+
Asn
GTT
[ENA]
¢þ
>WENV183740908
PJUF01017052
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
3
77
+
Asn
GTT
[ENA]
¢þ
>WENV183740918
PJUF01017817
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1113
1039
-
Asn
GTT
[ENA]
¢þ
>WENV183742387
PJUH01021110
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
284
358
+
Asn
GTT
[ENA]
¢þ
>WENV170010446
APMI01017301
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
5216
5142
-
Asn
GTT
[ENA]
¢þ
>WENV170010573
APMI01021065
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
8631
8555
-
Asn
GTT
[ENA]
¢þ
>WENV170609738
FUWD011484481
[FUWD] metagenome; unknown
192
268
+
Asn
GTT
[ENA]
¢þ
>WENV170650539
JRYE01003114
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
4
80
+
Asn
GTT
[ENA]
¢þ
>WENV170660212
JXWT01032598
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
130
204
+
Asn
GTT
[ENA]
¢þ
>WENV170711189
LNFM01003935
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
22347
22271
-
Asn
GTT
[ENA]
¢þ
>WENV170721350
LSQX01186998
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
34602
34678
+
Asn
GTT
[ENA]
¢þ
>WENV170967405
MTKW01001264
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
80439
80513
+
Asn
GTT
[ENA]
¢þ
>WENV170986137
MWVX01017675
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1715
1789
+
Asn
GTT
[ENA]
¢þ
>WENV170989865
MWVZ01127172
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
288
362
+
Asn
GTT
[ENA]
¢þ
>WENV170989957
MWVZ01162516
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
292
218
-
Asn
GTT
[ENA]
¢þ
>WENV170996268
MWWF01199795
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
297
371
+
Asn
GTT
[ENA]
¢þ
>WENV170999523
MWWK01078857
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
240
164
-
Asn
GTT
[ENA]
¢þ
>C191085415
CP032157
Bacteroidota
Paraflavitalea soli 5GH32-13 [CP032157]
6288589
6288515
-
Asn
GTT
-
¡û
>C191153643
CP037755
Bacteroidota
Pseudocnuella soli 17J28-1 [CP037755]
382160
382234
+
Asn
GTT
-
¡û
>W09107706
ABLI01000009
Bacteroidota
Candidatus Amoebophilus asiaticus asiaticus 5a2 [ABLI]
22373
22447
+
Asn
GTT
[ENA]
¡û
>W09108587
ABTK01000001
Bacteroidota
Chitinophaga pinensis DSM 2588 [ABTK]
3612593
3612667
+
Asn
GTT
[ENA]
¡û
>W1810393014
PYAW01000001
Bacteroidota
Chitinophaga niastensis DSM 24859 [PYAW]
919202
919276
+
Asn
GTT
[ENA]
¡û
>W1810400811
PYGK01000001
Bacteroidota
Chitinophaga ginsengisoli DSM 18107 [PYGK]
175525
175451
-
Asn
GTT
[ENA]
¡û
>W1810532613
QCYL01000004
Bacteroidota
Chitinophaga costaii A37T2 [QCYL]
295486
295560
+
Asn
GTT
[ENA]
¡û
>W1810586445
QFFJ01000001
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
3133142
3133068
-
Asn
GTT
[ENA]
¡û
>W1810692640
QLKR01000006
Bacteroidota
Niabella yanshanensis HAMBI_3031 [QLKR]
183388
183462
+
Asn
GTT
[ENA]
¡û
>W1810694440
QLMA01000002
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
20702
20776
+
Asn
GTT
[ENA]
¡û
>W1810694441
QLMA01000002
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
25794
25868
+
Asn
GTT
[ENA]
¡û
>W1810695373
QLNL01000001
Bacteroidota
Chitinophaga ginsengisegetis 28_1 [QLNL]
1235285
1235211
-
Asn
GTT
[ENA]
¡û
>W1810721923
QNTR01000001
Bacteroidota
Chitinophaga arvensicola 10_5 24_1 [QNTR]
619302
619376
+
Asn
GTT
[ENA]
¡û
>W1810745622
QOWJ01000016
Bacteroidota
Paracnuella aquatica N24 [QOWJ]
128684
128758
+
Asn
GTT
[ENA]
¡û
>W1810762368
QPMM01000004
Bacteroidota
Chitinophaga silvatica GDMCC 1.1288 [QPMM]
387398
387472
+
Asn
GTT
[ENA]
¡û
>W1810762412
QPMM01000021
Bacteroidota
Chitinophaga silvatica GDMCC 1.1288 [QPMM]
27721
27647
-
Asn
GTT
[ENA]
¡û
>W1810858520
QTJV01000002
Bacteroidota
Chitinophaga silvisoli K20C18050901 [QTJV]
601317
601243
-
Asn
GTT
[ENA]
¡û
>C151016377
CP007035
Bacteroidota
Niabella soli DSM 19437 JS13-8; DSM 19437 [CP007035]
3387341
3387417
+
Asn
GTT
[Ensembl]
¡û
>W1510019442
BBWV01000001
Bacteroidota
Flavihumibacter petaseus NBRC 106054 [BBWV]
2178452
2178376
-
Asn
GTT
[ENA]
¡û
>W1510021036
BBYI01000008
Bacteroidota
Lentimicrobium saccharophilum TBC1 [BBYI]
144062
144138
+
Asn
GTT
[ENA]
¡û
>C10103773
CP001699
Bacteroidota
Chitinophaga pinensis DSM 2588 [CP001699]
718369
718295
-
Asn
GTT
[Ensembl]
¡û
>W1511300693
JPHF01000001
Bacteroidota
Flavihumibacter sp. ZG627 [JPHF]
16680
16606
-
Asn
GTT
[ENA]
¡û
>W1511387768
JSVC01000010
Bacteroidota
Flavihumibacter solisilvae 3·î3Æü [JSVC]
221456
221530
+
Asn
GTT
[ENA]
¡û
>C161090546
CP015772
Bacteroidota
Niabella ginsenosidivorans BS26 [CP015772]
5014319
5014395
+
Asn
GTT
[Ensembl]
¡û
>W121017767
AGSA01000028
Bacteroidota
Niabella soli DSM 19437 [AGSA]
1158453
1158529
+
Asn
GTT
[ENA]
¡û
>W1610514954
FMAR01000002
Bacteroidota
Chitinophaga costaii [FMAR]
295674
295748
+
Asn
GTT
[ENA]
¡û
>W1610617787
LGYU01000005
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
152091
152165
+
Asn
GTT
[ENA]
¡û
>W1610754337
LNFJ01000021
Bacteroidota
Bacteroidia bacterium Ga0077558 [LNFJ]
22351
22275
-
Asn
GTT
[ENA]
¡û
>W1610935533
LUKG01000064
Bacteroidota
Flavihumibacter sp. CACIAM 22H1 [LUKG]
19649
19723
+
Asn
GTT
[ENA]
¡û
>W1710500644
FMAR01000002
Bacteroidota
Chitinophaga costaii [FMAR]
295674
295748
+
Asn
GTT
[ENA]
¡û
>W1710512681
FMZO01000013
Bacteroidota
Niabella drilacis [FMZO]
74308
74384
+
Asn
GTT
[ENA]
¡û
>W1710515118
FNBN01000001
Bacteroidota
Chitinophaga filiformis [FNBN]
1287541
1287465
-
Asn
GTT
[ENA]
¡û
>W1710533872
FNRL01000015
Bacteroidota
Chitinophaga terrae (ex Kim and Jung 2007) Kim and Jung 2007 [FNRL]
127321
127245
-
Asn
GTT
[ENA]
¡û
>W1710533884
FNRL01000032
Bacteroidota
Chitinophaga terrae (ex Kim and Jung 2007) Kim and Jung 2007 [FNRL]
69974
70050
+
Asn
GTT
[ENA]
¡û
>W1710544790
FOBB01000001
Bacteroidota
Chitinophaga rupis [FOBB]
976471
976545
+
Asn
GTT
[ENA]
¡û
>W1710555279
FOJG01000001
Bacteroidota
Chitinophaga arvensicola [FOJG]
953051
953127
+
Asn
GTT
[ENA]
¡û
>W1710555280
FOJG01000001
Bacteroidota
Chitinophaga arvensicola [FOJG]
975493
975567
+
Asn
GTT
[ENA]
¡û
>W1710570089
FOUX01000003
Bacteroidota
Chitinophaga sp. YR627 [FOUX]
242988
242914
-
Asn
GTT
[ENA]
¡û
>W1710583476
FQUU01000027
Bacteroidota
Flavisolibacter ginsengisoli DSM 18119 [FQUU]
23145
23071
-
Asn
GTT
[ENA]
¡û
>W1710591026
FRBL01000005
Bacteroidota
Chitinophaga jiangningensis [FRBL]
369874
369950
+
Asn
GTT
[ENA]
¡û
>W1710591027
FRBL01000005
Bacteroidota
Chitinophaga jiangningensis [FRBL]
375126
375202
+
Asn
GTT
[ENA]
¡û
>W1710592501
FRCN01000002
Bacteroidota
Chitinophaga sp. CF418 [FRCN]
460913
460987
+
Asn
GTT
[ENA]
¡û
>W1710601091
FUWZ01000002
Bacteroidota
Chitinophaga eiseniae [FUWZ]
1233541
1233467
-
Asn
GTT
[ENA]
¡û
>W1710604530
FUZZ01000003
Bacteroidota
Chitinophaga ginsengisegetis [FUZZ]
810415
810491
+
Asn
GTT
[ENA]
¡û
>W1710743840
LGYU01000005
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
152091
152165
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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