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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276012 (13 seq.)
>WENV180022327
FTFY01000871
[FTFY] metagenome; soil
37457
37381
-
Gln
TTG
[ENA]
¢þ
>WENV180026550
FTIU01002197
[FTIU] metagenome; soil
3225
3301
+
Gln
TTG
[ENA]
¢þ
>WENV180029870
FTJL01010855
[FTJL] metagenome; soil
624
700
+
Gln
TTG
[ENA]
¢þ
>W1911572389
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
3113905
3113829
-
Gln
TTG
[ENA]
¡û
>C151062627
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
751519
751443
-
Gln
TTG
[Ensembl]
¡û
>C11105100
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
714965
714889
-
Gln
TTG
[Ensembl]
¡û
>C161053621
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
927970
927894
-
Gln
TTG
[Ensembl]
¡û
>C161053716
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
741366
741290
-
Gln
TTG
[Ensembl]
¡û
>C161053814
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
679471
679395
-
Gln
TTG
[Ensembl]
¡û
>W1710530363
FNOR01000009
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
53628
53704
+
Gln
TTG
[ENA]
¡û
>W1710556461
FOKF01000033
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
27483
27559
+
Gln
TTG
[ENA]
¡û
>W1710557530
FOLC01000004
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
208816
208740
-
Gln
TTG
[ENA]
¡û
>W1710564215
FOQI01000005
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
234874
234798
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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