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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276079 (48 seq.)
>W1711179429
LWHQ01000028
Alphaproteobacteria
Methylobacterium platani [LWHQ]
10462
10538
+
Met
CAT
[ENA]
¡û
>WENV180582297
OCMO01045641
[OCMO] metagenome; diffuse fluid
79
155
+
Met
CAT
[ENA]
¢þ
>WENV180691619
OCZS010166419
[OCZS] soil metagenome; soil
271
347
+
Met
CAT
[ENA]
¢þ
>W141096549
AVFL01000045
Alphaproteobacteria
Skermanella stibiiresistens SB22 [AVFL]
36355
36431
+
Met
CAT
[ENA]
¡û
>WENV181167176
OEIU01012389
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
251
327
+
Met
CAT
[ENA]
¢þ
>WENV181308398
OFIS01012648
[OFIS] sludge metagenome; sludge
551
475
-
Met
CAT
[ENA]
¢þ
>WENV181311548
OFJB01004103
[OFJB] sludge metagenome; sludge
2882
2958
+
Met
CAT
[ENA]
¢þ
>WENV181311867
OFJB01017106
[OFJB] sludge metagenome; sludge
75
1
-
Met
CAT
[ENA]
¢þ
>WENV181401859
OFTX01011465
[OFTX] sludge metagenome; sludge
967
891
-
Met
CAT
[ENA]
¢þ
>W141220765
AZYE01000595
Alphaproteobacteria
Microvirga lupini [AZYE]
46621
46697
+
Met
CAT
[ENA]
¡û
>W141276710
JAEA01000002
Alphaproteobacteria
Microvirga flocculans ATCC BAA-817 [JAEA]
41952
42028
+
Met
CAT
[ENA]
¡û
>WENV183798695
PVBE010440961
[PVBE] marine metagenome; water
409
485
+
Met
CAT
[ENA]
¢þ
>WENV170680923
LFEF01034723
[LFEF] freshwater metagenome; waterbloom
46
122
+
Met
CAT
[ENA]
¢þ
>C181020293
CP016616
Alphaproteobacteria
Microvirga ossetica V5/3M [CP016616]
3784591
3784667
+
Met
CAT
-
¡û
>C181179094
CP029481
Alphaproteobacteria
Microvirga sp. 17 mud 1-3 [CP029481]
989813
989889
+
Met
CAT
-
¡û
>C181180086
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
942022
942098
+
Met
CAT
-
¡û
>C181180230
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
3510884
3510808
-
Met
CAT
-
¡û
>W141810218
JPUG01000076
Alphaproteobacteria
Microvirga sp. BSC39 aerilata [JPUG]
153779
153855
+
Met
CAT
[ENA]
¡û
>W1911653560
QDGA01000008
Alphaproteobacteria
Microvirga calopogonii CCBAU 65841 [QDGA]
140096
140172
+
Met
CAT
[ENA]
¡û
>W1810079877
PELK01001136
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
740
664
-
Met
CAT
[ENA]
¡û
>W1810534735
QDAH01000033
Alphaproteobacteria
Microvirga sp. KLBC 81 [QDAH]
27146
27222
+
Met
CAT
[ENA]
¡û
>W1810735513
QOIO01000033
Alphaproteobacteria
Microvirga aerophila DSM 21344 [QOIO]
14873
14797
-
Met
CAT
[ENA]
¡û
>W1810763420
QQBB01000004
Alphaproteobacteria
Microvirga subterranea DSM 14364 [QQBB]
239645
239569
-
Met
CAT
[ENA]
¡û
>SRA1010896
SRR020492.207066
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
64
140
+
Met
CAT
[SRA]
>W1511400893
JTHF01000111
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
20217
20141
-
Met
CAT
[ENA]
¡û
>W1511400934
JTHG01000054
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
77549
77625
+
Met
CAT
[ENA]
¡û
>W1511507874
JXOD01000054
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
25442
25518
+
Met
CAT
[ENA]
¡û
>W1511563268
LABX01000264
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
4064
4140
+
Met
CAT
[ENA]
¡û
>W1511563289
LABY01000028
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
48959
49035
+
Met
CAT
[ENA]
¡û
>W1511563384
LABZ01000179
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
8512
8436
-
Met
CAT
[ENA]
¡û
>W1511624260
LCYG01000021
Alphaproteobacteria
Microvirga vignae BR3299 [LCYG]
26177
26253
+
Met
CAT
[ENA]
¡û
>C161001131
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
1010830
1010906
+
Met
CAT
[Ensembl]
¡û
>W121068039
AJUA01000074
Alphaproteobacteria
Microvirga lotononidis WSM3557 [AJUA]
198541
198617
+
Met
CAT
[ENA]
¡û
>W1610026899
AVFK01000021
Alphaproteobacteria
Skermanella aerolata KACC 11604 [AVFK]
83578
83502
-
Met
CAT
[ENA]
¡û
>W1610047421
BBDG01001514
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
174
98
-
Met
CAT
[ENA]
¡û
>W1610590461
LDRL01000238
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
3454
3378
-
Met
CAT
[ENA]
¡û
>W1610590485
LDRM01000034
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
77385
77461
+
Met
CAT
[ENA]
¡û
>W1610590598
LDRN01000303
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
3194
3270
+
Met
CAT
[ENA]
¡û
>W1610987330
LWHQ01000028
Alphaproteobacteria
Methylobacterium platani [LWHQ]
10462
10538
+
Met
CAT
[ENA]
¡û
>W1710023064
AVFK01000021
Alphaproteobacteria
Skermanella aerolata KACC 11604 [AVFK]
83578
83502
-
Met
CAT
[ENA]
¡û
>W1710044026
BBDG01001514
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
174
98
-
Met
CAT
[ENA]
¡û
>W1710507550
FMVJ01000002
Alphaproteobacteria
Microvirga guangxiensis [FMVJ]
628340
628264
-
Met
CAT
[ENA]
¡û
>W1710548843
FOEB01000021
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
112057
112133
+
Met
CAT
[ENA]
¡û
>W1710560692
FONO01000030
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
40612
40688
+
Met
CAT
[ENA]
¡û
>W1710579054
FPCB01000017
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
113336
113260
-
Met
CAT
[ENA]
¡û
>W1710709741
LDRL01000238
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
3454
3378
-
Met
CAT
[ENA]
¡û
>W1710709765
LDRM01000034
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
77385
77461
+
Met
CAT
[ENA]
¡û
>W1710709878
LDRN01000303
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
3194
3270
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK