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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276112 (36 seq.)
>W1711178416
LWGR01000007
Actinomycetota
Nocardia terpenica [LWGR]
1204385
1204459
+
Pro
GGG
[ENA]
¡û
>W131180005
ARMU01000005
Actinomycetota
Nocardia sp. BMG111209 [ARMU]
701347
701271
-
Pro
GGG
[ENA]
¡û
>WENV181169400
OEIV010002200
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
7830
7754
-
Pro
GGG
[ENA]
¢þ
>C181017396
CP015453
Actinomycetota
Dietzia psychralcaliphila ILA-1 [CP015453]
1618934
1619008
+
Pro
GGG
-
¡û
>C181090295
CP023778
Actinomycetota
Nocardia terpenica NC_YFY_NT001 [CP023778]
3524512
3524436
-
Pro
GGG
-
¡û
>C181107049
CP024869
Actinomycetota
Dietzia sp. JS16-p6b [CP024869]
1640338
1640412
+
Pro
GGG
-
¡û
>C191117159
CP033972
Actinomycetota
Gordonia insulae MMS17-SY073 [CP033972]
1393887
1393811
-
Pro
GGG
-
¡û
>W1911279032
NTGA01000039
Actinomycetota
Dietzia natronolimnaea S-XJ-1 [NTGA]
1630
1556
-
Pro
GGG
[ENA]
¡û
>W1911422564
NXEI01000001
Actinomycetota
Dietzia sp. WMMA184 [NXEI]
732359
732285
-
Pro
GGG
[ENA]
¡û
>W1911709293
QPKK01000044
Actinomycetota
Desertihabitans aurantiacus CPCC 204711 [QPKK]
6673
6599
-
Pro
GGG
[ENA]
¡û
>W1810168603
PJJJ01000022
Actinomycetota
Cryobacterium sp. Y82 [PJJJ]
61429
61505
+
Pro
GGG
[ENA]
¡û
>W1810168640
PJJK01000063
Actinomycetota
Cryobacterium sp. Y62 [PJJK]
6166
6090
-
Pro
GGG
[ENA]
¡û
>W1810168707
PJJL01000071
Actinomycetota
Cryobacterium sp. Y57 [PJJL]
322310
322386
+
Pro
GGG
[ENA]
¡û
>W1810168732
PJJM01000077
Actinomycetota
Cryobacterium sp. Y50 [PJJM]
6765
6841
+
Pro
GGG
[ENA]
¡û
>W1810168810
PJJN01000037
Actinomycetota
Cryobacterium sp. Y29 [PJJN]
368509
368585
+
Pro
GGG
[ENA]
¡û
>W1810168820
PJJO01000050
Actinomycetota
Cryobacterium sp. Y11 [PJJO]
49773
49697
-
Pro
GGG
[ENA]
¡û
>W1810168945
PJJQ01000036
Actinomycetota
Cryobacterium sp. N21 [PJJQ]
55875
55799
-
Pro
GGG
[ENA]
¡û
>W1810168988
PJJR01000054
Actinomycetota
Cryobacterium sp. N19 [PJJR]
466969
466895
-
Pro
GGG
[ENA]
¡û
>W1810169058
PJJT01000087
Actinomycetota
Cryobacterium sp. M91 [PJJT]
76422
76346
-
Pro
GGG
[ENA]
¡û
>W1810169175
PJJW01000025
Actinomycetota
Cryobacterium sp. M15 [PJJW]
29764
29688
-
Pro
GGG
[ENA]
¡û
>SRA1003265
SRR002326.351935
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
120
46
-
Pro
GGG
[SRA]
>W1810240360
PPTG01000009
Actinomycetota
Cryobacterium aureum Hh31 [PPTG]
378625
378701
+
Pro
GGG
[ENA]
¡û
>W1810282100
PSXY01000044
Actinomycetota
Clavibacter michiganensis AY1B3 [PSXY]
2782
2856
+
Pro
GGG
[ENA]
¡û
>W1810463966
PZZY01000011
Actinomycetota
Dietzia psychralcaliphila DSM 44820 [PZZY]
88458
88384
-
Pro
GGG
[ENA]
¡û
>W1810763495
QQBC01000018
Actinomycetota
Nocardia pseudobrasiliensis DSM 44290 [QQBC]
6833
6757
-
Pro
GGG
[ENA]
¡û
>W121125859
BAGI01000807
Actinomycetota
Nocardia terpenica NBRC 100888 [BAGI]
257
331
+
Pro
GGG
[ENA]
¡û
>W1610057450
BBXO01000092
Actinomycetota
Nocardia pseudobrasiliensis [BBXO]
24842
24916
+
Pro
GGG
[ENA]
¡û
>W1610074604
BCWU01000018
Actinomycetota
Gordonia hydrophobica NBRC 16057 [BCWU]
35641
35567
-
Pro
GGG
[ENA]
¡û
>W1610079559
BDBS01000065
Actinomycetota
Nocardia pseudobrasiliensis NBRC 108224 [BDBS]
5760
5684
-
Pro
GGG
[ENA]
¡û
>W1610986463
LWGR01000007
Actinomycetota
Nocardia terpenica [LWGR]
1204385
1204459
+
Pro
GGG
[ENA]
¡û
>W1710054149
BBXO01000092
Actinomycetota
Nocardia pseudobrasiliensis [BBXO]
24842
24916
+
Pro
GGG
[ENA]
¡û
>W1710071722
BCWU01000018
Actinomycetota
Gordonia hydrophobica NBRC 16057 [BCWU]
35641
35567
-
Pro
GGG
[ENA]
¡û
>W1710078118
BDBS01000065
Actinomycetota
Nocardia pseudobrasiliensis NBRC 108224 [BDBS]
5760
5684
-
Pro
GGG
[ENA]
¡û
>W1710523526
FNIB01000003
Actinomycetota
Cryobacterium flavum [FNIB]
38296
38220
-
Pro
GGG
[ENA]
¡û
>W1710546937
FOCN01000015
Actinomycetota
Cryobacterium luteum [FOCN]
20130
20206
+
Pro
GGG
[ENA]
¡û
>W1710563691
FOPW01000014
Actinomycetota
Cryobacterium levicorallinum [FOPW]
63452
63376
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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