This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276128 (41 seq.)
>W1710803017
LJYG01000055
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
100299
100375
+
Arg
CCT
[ENA]
¡û
>W1711072982
LSIC01000056
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
21433
21357
-
Arg
CCT
[ENA]
¡û
>W1711138894
LVEM01000005
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
244358
244434
+
Arg
CCT
[ENA]
¡û
>W1711928934
NAFL01000216
Alphaproteobacteria
Bradyrhizobium japonicum [NAFL]
692
616
-
Arg
CCT
[ENA]
¡û
>W1712049623
NFUH01000358
Alphaproteobacteria
Bradyrhizobium guangdongense [NFUH]
2765
2689
-
Arg
CCT
[ENA]
¡û
>C171064706
CP017637
Alphaproteobacteria
Bradyrhizobium japonicum J5 [CP017637]
124170
124094
-
Arg
CCT
-
¡û
>W141150294
AXAG01000027
Alphaproteobacteria
Bradyrhizobium japonicum USDA 38 [AXAG]
30473
30549
+
Arg
CCT
[ENA]
¡û
>W141151166
AXAV01000037
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AXAV]
17830
17906
+
Arg
CCT
[ENA]
¡û
>W141151289
AXAY01000012
Alphaproteobacteria
Bradyrhizobium sp. WSM3983 [AXAY]
113446
113370
-
Arg
CCT
[ENA]
¡û
>W141233873
BAWE01000002
Alphaproteobacteria
Bradyrhizobium sp. DOA9 [BAWE]
799773
799697
-
Arg
CCT
[ENA]
¡û
>WENV183726363
PJQF01173805
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
93
169
+
Arg
CCT
[ENA]
¢þ
>WENV170593656
FUFK010955100
[FUFK] metagenome; unknown
186
262
+
Arg
CCT
[ENA]
¢þ
>WENV170706202
LNAP01001657
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
16121
16045
-
Arg
CCT
[ENA]
¢þ
>WENV170707332
LNAP01017773
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3808
3732
-
Arg
CCT
[ENA]
¢þ
>C181178178
CP029426
Alphaproteobacteria
Bradyrhizobium amphicarpaeae 39S1MB [CP029426]
349271
349347
+
Arg
CCT
-
¡û
>C181178222
CP029427
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 85S1MB [CP029427]
40293
40369
+
Arg
CCT
-
¡û
>C191071707
CP030053
Alphaproteobacteria
Bradyrhizobium guangzhouense CCBAU 51670 [CP030053]
864500
864576
+
Arg
CCT
-
¡û
>C191186642
CP041090
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 65S1MB [CP041090]
6330249
6330325
+
Arg
CCT
-
¡û
>W1910183099
BJNK01000060
Alphaproteobacteria
Bradyrhizobium japonicum NBRC 14783 [BJNK]
17570
17646
+
Arg
CCT
[ENA]
¡û
>W1910611556
LFJC01000003
Alphaproteobacteria
Bradyrhizobium nitroreducens TSA1 [LFJC]
5865711
5865787
+
Arg
CCT
[ENA]
¡û
>W1911410027
NWTI01000032
Alphaproteobacteria
Bradyrhizobium sp. Y36 [NWTI]
57196
57120
-
Arg
CCT
[ENA]
¡û
>C151066572
CP010313
Alphaproteobacteria
Bradyrhizobium japonicum E109 [CP010313]
129187
129111
-
Arg
CCT
[Ensembl]
¡û
>W1510973755
JGCL01000047
Alphaproteobacteria
Bradyrhizobium japonicum FN1 [JGCL]
17618
17694
+
Arg
CCT
[ENA]
¡û
>W1511353652
JRPN01000035
Alphaproteobacteria
Bradyrhizobium japonicum Is-34 [JRPN]
221341
221417
+
Arg
CCT
[ENA]
¡û
>C121000502
AP012206
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AP012206]
129179
129103
-
Arg
CCT
[Ensembl]
¡û
>C121000712
AP012279
Alphaproteobacteria
Bradyrhizobium cosmicum S23321 [AP012279]
701019
701095
+
Arg
CCT
[Ensembl]
¡û
>C161017389
CP007569
Alphaproteobacteria
Bradyrhizobium japonicum SEMIA 5079 [CP007569]
8533564
8533640
+
Arg
CCT
[Ensembl]
¡û
>C161107916
LN907826
Alphaproteobacteria
Bradyrhizobium sp. [LN907826]
1346913
1346989
+
Arg
CCT
-
¡û
>W121065277
AJPX01000043
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15354 [AJPX]
8542
8466
-
Arg
CCT
[ENA]
¡û
>W121065352
AJPY01000429
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15517 [AJPY]
27501
27577
+
Arg
CCT
[ENA]
¡û
>W121065395
AJPZ01000310
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15618 [AJPZ]
23608
23532
-
Arg
CCT
[ENA]
¡û
>W121065440
AJQA01000228
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 25435 [AJQA]
27525
27601
+
Arg
CCT
[ENA]
¡û
>W121065494
AJQB01000417
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 83623 [AJQB]
27502
27578
+
Arg
CCT
[ENA]
¡û
>W121065631
AJQE01000201
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 43298 [AJQE]
19699
19775
+
Arg
CCT
[ENA]
¡û
>W121065879
AJQJ01000318
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 05623 [AJQJ]
16509
16433
-
Arg
CCT
[ENA]
¡û
>W121085066
AKIY01000151
Alphaproteobacteria
Bradyrhizobium sp. YR681 [AKIY]
9944
9868
-
Arg
CCT
[ENA]
¡û
>W1610666874
LJYG01000055
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
100299
100375
+
Arg
CCT
[ENA]
¡û
>W1610912242
LSIC01000056
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
21433
21357
-
Arg
CCT
[ENA]
¡û
>W1610949902
LVEM01000005
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
244358
244434
+
Arg
CCT
[ENA]
¡û
>W1710564439
FOQM01000022
Alphaproteobacteria
Bradyrhizobium sp. Gha [FOQM]
92191
92115
-
Arg
CCT
[ENA]
¡û
>W1710571299
FOVU01000003
Alphaproteobacteria
Bradyrhizobium sp. Ghvi [FOVU]
601401
601325
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK