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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276160 (84 seq.)
>W1711934402
NAJR01000003
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
25126
25050
-
Arg
ACG
[ENA]
¡û
>W1711934404
NAJR01000003
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
24862
24786
-
Arg
ACG
[ENA]
¡û
>W1711934406
NAJR01000003
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
24563
24487
-
Arg
ACG
[ENA]
¡û
>W1712080440
NGZL01000012
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
35478
35554
+
Arg
ACG
[ENA]
¡û
>W1712080443
NGZL01000012
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
35897
35973
+
Arg
ACG
[ENA]
¡û
>WENV013002
AACY020356171
Marine microbial communities from Global Ocean Sampling (GOS)
6582
6506
-
Arg
ACG
[ENA]
>WENV013004
AACY020356171
Marine microbial communities from Global Ocean Sampling (GOS)
6881
6805
-
Arg
ACG
[ENA]
>WENV013006
AACY020356171
Marine microbial communities from Global Ocean Sampling (GOS)
7122
7046
-
Arg
ACG
[ENA]
>WENV013008
AACY020356171
Marine microbial communities from Global Ocean Sampling (GOS)
7388
7310
-
Arg
ACG
[ENA]
>C022227
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1332751
1332827
+
Arg
ACG
[Ensembl]
¡û
>C022229
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1333015
1333091
+
Arg
ACG
[Ensembl]
¡û
>C022231
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1333256
1333332
+
Arg
ACG
[Ensembl]
¡û
>C022233
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1333555
1333631
+
Arg
ACG
[Ensembl]
¡û
>C022329
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1327559
1327635
+
Arg
ACG
[Ensembl]
¡û
>C022331
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1327825
1327901
+
Arg
ACG
[Ensembl]
¡û
>C022333
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1328066
1328142
+
Arg
ACG
[Ensembl]
¡û
>C022335
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1328365
1328441
+
Arg
ACG
[Ensembl]
¡û
>C022425
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1403967
1404043
+
Arg
ACG
[Ensembl]
¡û
>C022427
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1404233
1404309
+
Arg
ACG
[Ensembl]
¡û
>C022429
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1404474
1404550
+
Arg
ACG
[Ensembl]
¡û
>C022431
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1404772
1404848
+
Arg
ACG
[Ensembl]
¡û
>C022972
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
3567853
3567777
-
Arg
ACG
[Ensembl]
¡û
>C022974
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
3567585
3567509
-
Arg
ACG
[Ensembl]
¡û
>C022978
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
3567045
3566969
-
Arg
ACG
[Ensembl]
¡û
>WENV180312017
OBJT01726682
[OBJT] soil metagenome; soil
1
77
+
Arg
ACG
[ENA]
¢þ
>W141171232
AXZL01000069
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
877
801
-
Arg
ACG
[ENA]
¡û
>W141171234
AXZL01000069
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
578
502
-
Arg
ACG
[ENA]
¡û
>C181057560
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
4898400
4898476
+
Arg
ACG
-
¡û
>C181057562
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
4898666
4898742
+
Arg
ACG
-
¡û
>C181057564
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
4898906
4898982
+
Arg
ACG
-
¡û
>C181057566
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
4899205
4899281
+
Arg
ACG
-
¡û
>C181062995
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3436555
3436479
-
Arg
ACG
-
¡û
>C181062997
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3436290
3436214
-
Arg
ACG
-
¡û
>C181062999
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3436049
3435973
-
Arg
ACG
-
¡û
>C181063001
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3435750
3435674
-
Arg
ACG
-
¡û
>W141520101
JGVI01000072
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
54338
54262
-
Arg
ACG
[ENA]
¡û
>W141520103
JGVI01000072
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
54072
53996
-
Arg
ACG
[ENA]
¡û
>W141520105
JGVI01000072
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
53832
53756
-
Arg
ACG
[ENA]
¡û
>W141520107
JGVI01000072
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
53533
53457
-
Arg
ACG
[ENA]
¡û
>C191205229
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3515588
3515664
+
Arg
ACG
-
¡û
>C191205231
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3515829
3515905
+
Arg
ACG
-
¡û
>C191205233
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3516128
3516204
+
Arg
ACG
-
¡û
>W09104026
AALH01000011
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
115783
115859
+
Arg
ACG
[ENA]
¡û
>W09104028
AALH01000011
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
116047
116123
+
Arg
ACG
[ENA]
¡û
>W09104030
AALH01000011
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
116288
116364
+
Arg
ACG
[ENA]
¡û
>W09104032
AALH01000011
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
116587
116663
+
Arg
ACG
[ENA]
¡û
>W09104610
AALX01000056
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
20993
20917
-
Arg
ACG
[ENA]
¡û
>W09104612
AALX01000056
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
20727
20651
-
Arg
ACG
[ENA]
¡û
>W09104614
AALX01000056
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
20486
20410
-
Arg
ACG
[ENA]
¡û
>W09104616
AALX01000056
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
20187
20111
-
Arg
ACG
[ENA]
¡û
>W1910913795
NHRI01000016
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
7415
7339
-
Arg
ACG
[ENA]
¡û
>W1910913797
NHRI01000016
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
7152
7076
-
Arg
ACG
[ENA]
¡û
>W1910913799
NHRI01000016
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
6911
6835
-
Arg
ACG
[ENA]
¡û
>W1910913801
NHRI01000016
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
6612
6536
-
Arg
ACG
[ENA]
¡û
>W1810073438
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
156669
156593
-
Arg
ACG
[ENA]
¡û
>W1810073440
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
156403
156327
-
Arg
ACG
[ENA]
¡û
>W1810073445
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
155770
155694
-
Arg
ACG
[ENA]
¡û
>W1810587753
QFLG01000029
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
72534
72610
+
Arg
ACG
[ENA]
¡û
>W1810587784
QFLG01000081
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
619
543
-
Arg
ACG
[ENA]
¡û
>WENV003393
AACY020092195
Marine microbial communities from Global Ocean Sampling (GOS)
24506
24584
+
Arg
ACG
[ENA]
>WENV003395
AACY020092195
Marine microbial communities from Global Ocean Sampling (GOS)
24773
24849
+
Arg
ACG
[ENA]
>WENV003397
AACY020092195
Marine microbial communities from Global Ocean Sampling (GOS)
25012
25090
+
Arg
ACG
[ENA]
>WENV003399
AACY020092195
Marine microbial communities from Global Ocean Sampling (GOS)
25312
25388
+
Arg
ACG
[ENA]
>W1511403494
JTLE01000033
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
97
173
+
Arg
ACG
[ENA]
¡û
>W1511403496
JTLE01000033
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
363
439
+
Arg
ACG
[ENA]
¡û
>W1511403498
JTLE01000033
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
603
679
+
Arg
ACG
[ENA]
¡û
>W1511403523
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
814178
814254
+
Arg
ACG
[ENA]
¡û
>W121103303
AKZL01000009
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
16812
16736
-
Arg
ACG
[ENA]
¡û
>W1610617910
LGYY01000263
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
6514
6438
-
Arg
ACG
[ENA]
¡û
>W1610617912
LGYY01000263
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
6248
6172
-
Arg
ACG
[ENA]
¡û
>W1610617914
LGYY01000263
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
6008
5932
-
Arg
ACG
[ENA]
¡û
>W1610617916
LGYY01000263
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
5709
5633
-
Arg
ACG
[ENA]
¡û
>W1710692498
JZWJ01000135
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
179199
179275
+
Arg
ACG
[ENA]
¡û
>W1710692500
JZWJ01000135
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
179465
179541
+
Arg
ACG
[ENA]
¡û
>W1710692502
JZWJ01000135
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
179705
179781
+
Arg
ACG
[ENA]
¡û
>W1710692504
JZWJ01000135
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
180004
180080
+
Arg
ACG
[ENA]
¡û
>W1710706701
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
303136
303060
-
Arg
ACG
[ENA]
¡û
>W1710706703
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
302870
302794
-
Arg
ACG
[ENA]
¡û
>W1710706705
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
302630
302554
-
Arg
ACG
[ENA]
¡û
>W1710706707
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
302331
302255
-
Arg
ACG
[ENA]
¡û
>W1710744085
LGYY01000263
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
6514
6438
-
Arg
ACG
[ENA]
¡û
>W1710744087
LGYY01000263
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
6248
6172
-
Arg
ACG
[ENA]
¡û
>W1710744089
LGYY01000263
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
6008
5932
-
Arg
ACG
[ENA]
¡û
>W1710744091
LGYY01000263
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
5709
5633
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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