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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276261 (30 seq.)
>W1710985848
LPTQ01000001
Gammaproteobacteria
Shigella boydii [LPTQ]
58315
58391
+
Met
CAT
[ENA]
¡û
>W1711115379
LUAD01000026
Gammaproteobacteria
Morganella sp. HMSC11D09 [LUAD]
48264
48340
+
Met
CAT
[ENA]
¡û
>W1711156042
LVOT01000074
Gammaproteobacteria
Escherichia coli [LVOT]
45914
45838
-
Met
CAT
[ENA]
¡û
>W1711173681
LWDC01000001
Gammaproteobacteria
Escherichia coli [LWDC]
2900067
2900143
+
Met
CAT
[ENA]
¡û
>W131194277
ASQM01000187
Gammaproteobacteria
Escherichia coli KTE33 [ASQM]
40514
40590
+
Met
CAT
[ENA]
¡û
>W1711930245
NAGB01000098
Gammaproteobacteria
Escherichia coli [NAGB]
53335
53411
+
Met
CAT
[ENA]
¡û
>WENV180355666
OBNI01016570
[OBNI] sediment metagenome; sediment
180
256
+
fMet
CAT
[ENA]
¢þ
>WENV181193827
OEQO01002489
[OEQO] metagenome; water of meat washing
763
687
-
fMet
CAT
[ENA]
¢þ
>WENV182845900
OKJH01000574
[OKJH] human gut metagenome; human gut
600
524
-
fMet
CAT
[ENA]
¢þ
>WENV170203987
CEPS01099544
[CEPS] marine metagenome genome assembly TARA_038_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
425
501
+
Met
CAT
[ENA]
¢þ
>C181142994
CP026845
Gammaproteobacteria
Shigella boydii NCTC 9733 [CP026845]
3536754
3536830
+
Met
CAT
-
¡û
>C181143110
CP026846
Gammaproteobacteria
Shigella boydii 59-2708 [CP026846]
4457074
4456998
-
Met
CAT
-
¡û
>C181143464
CP026877
Gammaproteobacteria
Shigella boydii ATCC 35964 [CP026877]
2790701
2790625
-
Met
CAT
-
¡û
>C181168542
CP028813
Gammaproteobacteria
Edwardsiella ictaluri MS-17-156 [CP028813]
861219
861295
+
Met
CAT
-
¡û
>W1910098112
BFVW01000054
Gammaproteobacteria
Escherichia coli KK-NP005 [BFVW]
33363
33287
-
Met
CAT
[ENA]
¡û
>W1911159338
NPMJ01000002
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Johannesburg CFSAN059880 [NPMJ]
215487
215563
+
Met
CAT
[ENA]
¡û
>W1911162941
NPZJ01000190
Gammaproteobacteria
Escherichia coli ECCTRSRTH04 [NPZJ]
89267
89191
-
Met
CAT
[ENA]
¡û
>C09106059
CP001600
Gammaproteobacteria
Edwardsiella ictaluri 93-146 [CP001600]
817747
817671
-
Met
CAT
[Ensembl]
¡û
>W1911168717
NQCS01000030
Gammaproteobacteria
Escherichia coli ECCTRSRTH10 [NQCS]
71
147
+
Met
CAT
[ENA]
¡û
>W1911224391
NRVI01000149
Gammaproteobacteria
Escherichia coli A93 [NRVI]
46215
46139
-
Met
CAT
[ENA]
¡û
>W1911224607
NRVL01000064
Gammaproteobacteria
Escherichia coli A32 [NRVL]
44734
44810
+
Met
CAT
[ENA]
¡û
>W1911757969
QWSJ01000007
Gammaproteobacteria
Shigella boydii DMB SH137 [QWSJ]
29566
29642
+
Met
CAT
[ENA]
¡û
>W1810097228
PGKE01000003
Gammaproteobacteria
Escherichia coli sc14-204 [PGKE]
89318
89242
-
Met
CAT
[ENA]
¡û
>W1810162846
PJFU01000007
Gammaproteobacteria
Escherichia coli 3150 [PJFU]
162293
162369
+
Met
CAT
[ENA]
¡û
>W1810276516
PSSR01000003
Gammaproteobacteria
Shigella boydii ATCC 35965 [PSSR]
39006
39082
+
Met
CAT
[ENA]
¡û
>W1810327257
PUGM01000043
Gammaproteobacteria
Shigella dysenteriae BS987 [PUGM]
11159
11083
-
Met
CAT
[ENA]
¡û
>W1810534529
QDAD01000001
Gammaproteobacteria
Edwardsiella ictaluri S07-698 [QDAD]
335706
335630
-
Met
CAT
[ENA]
¡û
>W11161254
AFGE01000056
Gammaproteobacteria
Shigella genomosp. SF-2015 5216-82 [AFGE]
16622
16698
+
Met
CAT
[ENA]
¡û
>W1610966582
LVOT01000074
Gammaproteobacteria
Escherichia coli [LVOT]
45914
45838
-
Met
CAT
[ENA]
¡û
>W1610982286
LWDC01000001
Gammaproteobacteria
Escherichia coli [LWDC]
2900067
2900143
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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