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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276277 (109 seq.)
>W1710776041
LIZH01001293
Betaproteobacteria
Duganella sp. Ant L27C-9 [LIZH]
800
724
-
Gln
TTG
[ENA]
¡û
>W1710870511
LMKO01000022
Betaproteobacteria
Xylophilus sp. Leaf220 [LMKO]
140861
140937
+
Gln
TTG
[ENA]
¡û
>W1710890906
LNCE01000035
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
46155
46231
+
Gln
TTG
[ENA]
¡û
>W1710934447
LOJI01000001
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
133552
133628
+
Gln
TTG
[ENA]
¡û
>W1710934484
LOJJ01000001
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
36833
36909
+
Gln
TTG
[ENA]
¡û
>W1711033427
LRHW01000086
Betaproteobacteria
Janthinobacterium lividum [LRHW]
65903
65979
+
Gln
TTG
[ENA]
¡û
>W1711033446
LRHX01000005
Betaproteobacteria
Janthinobacterium sp. MP5059B [LRHX]
129445
129521
+
Gln
TTG
[ENA]
¡û
>W1711033517
LRHY01000056
Betaproteobacteria
Janthinobacterium sp. HH100 [LRHY]
116070
115994
-
Gln
TTG
[ENA]
¡û
>W1711033587
LRHZ01000012
Betaproteobacteria
Janthinobacterium sp. HH102 [LRHZ]
116286
116210
-
Gln
TTG
[ENA]
¡û
>W1711033652
LRIA01000075
Betaproteobacteria
Janthinobacterium sp. HH103 [LRIA]
116075
115999
-
Gln
TTG
[ENA]
¡û
>W1711033735
LRIB01000054
Betaproteobacteria
Janthinobacterium sp. HH104 [LRIB]
65580
65656
+
Gln
TTG
[ENA]
¡û
>W1711033787
LRIC01000073
Betaproteobacteria
Janthinobacterium sp. HH106 [LRIC]
66050
66126
+
Gln
TTG
[ENA]
¡û
>W1711033826
LRID01000082
Betaproteobacteria
Janthinobacterium sp. HH107 [LRID]
66521
66597
+
Gln
TTG
[ENA]
¡û
>W1711147364
LVJO01000026
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
874145
874221
+
Gln
TTG
[ENA]
¡û
>W1711149075
LVLD01000019
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
687911
687987
+
Gln
TTG
[ENA]
¡û
>W1711149111
LVLE01000025
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
674080
674156
+
Gln
TTG
[ENA]
¡û
>W1711149145
LVLF01000013
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
809037
809113
+
Gln
TTG
[ENA]
¡û
>W1711149186
LVLG01000007
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
696735
696811
+
Gln
TTG
[ENA]
¡û
>W1711272435
LZFI01000003
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
123826
123750
-
Gln
TTG
[ENA]
¡û
>W1711281976
LZMQ01000001
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
141811
141735
-
Gln
TTG
[ENA]
¡û
>W1711282047
LZMR01000007
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
250705
250781
+
Gln
TTG
[ENA]
¡û
>W1711301912
MAIK01000361
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
329
405
+
Gln
TTG
[ENA]
¡û
>W1711308600
MAQB02000001
Betaproteobacteria
Janthinobacterium lividum [MAQB]
1426937
1426861
-
Gln
TTG
[ENA]
¡û
>W1711421582
MHZG01000001
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
579535
579611
+
Gln
TTG
[ENA]
¡û
>W1711625780
MPIY01000003
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
250880
250804
-
Gln
TTG
[ENA]
¡û
>W1711932786
NAIA01000001
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
220104
220180
+
Gln
TTG
[ENA]
¡û
>W1712004463
NEGX01000018
Betaproteobacteria
Janthinobacterium sp. GW460W [NEGX]
33367
33291
-
Gln
TTG
[ENA]
¡û
>W1712004545
NEGY01000020
Betaproteobacteria
Janthinobacterium sp. GW460P [NEGY]
33393
33317
-
Gln
TTG
[ENA]
¡û
>W1712004599
NEGZ01000016
Betaproteobacteria
Janthinobacterium sp. GW458P [NEGZ]
28247
28323
+
Gln
TTG
[ENA]
¡û
>W1712004678
NEHA01000014
Betaproteobacteria
Janthinobacterium sp. GW456W [NEHA]
33382
33306
-
Gln
TTG
[ENA]
¡û
>W1712004770
NEHB01000010
Betaproteobacteria
Janthinobacterium sp. GW456P [NEHB]
89789
89713
-
Gln
TTG
[ENA]
¡û
>W1712077007
NGUO01000002
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
90464
90540
+
Gln
TTG
[ENA]
¡û
>W1712077024
NGUO01000008
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
77947
78023
+
Gln
TTG
[ENA]
¡û
>W1712077054
NGUP01000003
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
438368
438444
+
Gln
TTG
[ENA]
¡û
>C171010511
CP011319
Betaproteobacteria
Janthinobacterium sp. 1_2014MBL_MicDiv [CP011319]
5686566
5686490
-
Gln
TTG
-
¡û
>C171035121
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
2166415
2166491
+
Gln
TTG
-
¡û
>C171035159
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
2183868
2183944
+
Gln
TTG
-
¡û
>C171035196
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
2069528
2069604
+
Gln
TTG
-
¡û
>C171094962
CP019510
Betaproteobacteria
Janthinobacterium sp. LM6 [CP019510]
794392
794468
+
Gln
TTG
-
¡û
>W131106728
APFF01000033
Betaproteobacteria
Janthinobacterium sp. CG3 [APFF]
178916
178840
-
Gln
TTG
[ENA]
¡û
>W131220813
ATZV01000056
Betaproteobacteria
beta proteobacterium SCGC AAA027-C02 [ATZV]
14394
14470
+
Gln
TTG
[ENA]
¡û
>C017388
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
1999091
1999167
+
Gln
TTG
[Ensembl]
¡û
>WENV016789
AACY020469994
Marine microbial communities from Global Ocean Sampling (GOS)
1733
1811
+
Gln
TTG
[ENA]
>WENV180261705
OBEQ011318820
[OBEQ] groundwater metagenome; groundwater
784
708
-
Gln
TTG
[ENA]
¢þ
>WENV180304583
OBJI01148980
[OBJI] soil metagenome; soil
88
12
-
Gln
TTG
[ENA]
¢þ
>C08007624
CP001010
Betaproteobacteria
Polynucleobacter necessarius [CP001010]
1427557
1427633
+
Gln
TTG
[Ensembl]
¡û
>WENV170616340
FUWD012885483
[FUWD] metagenome; unknown
727
803
+
Gln
TTG
[ENA]
¢þ
>W141484455
JFYR01000012
Betaproteobacteria
Janthinobacterium lividum [JFYR]
582798
582874
+
Gln
TTG
[ENA]
¡û
>C181078392
CP023276
Betaproteobacteria
Polynucleobacter difficilis AM-8B5 [CP023276]
1844370
1844446
+
Gln
TTG
-
¡û
>C181081099
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
817606
817682
+
Gln
TTG
-
¡û
>C181187680
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
1470542
1470618
+
Gln
TTG
-
¡û
>C181218881
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
1641548
1641624
+
Gln
TTG
-
¡û
>C181218914
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
1404638
1404714
+
Gln
TTG
-
¡û
>C181218985
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
1372906
1372982
+
Gln
TTG
-
¡û
>C181219037
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
175675
175599
-
Gln
TTG
-
¡û
>C181219044
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
513272
513348
+
Gln
TTG
-
¡û
>C181219090
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
1370540
1370616
+
Gln
TTG
-
¡û
>C191098095
CP033019
Betaproteobacteria
Janthinobacterium agaricidamnosum BHSEK [CP033019]
82304
82380
+
Gln
TTG
-
¡û
>C191188142
CP041185
Betaproteobacteria
Janthinobacterium tructae SNU WT3 [CP041185]
4679292
4679368
+
Gln
TTG
-
¡û
>W09106290
AAUC01000006
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
37615
37691
+
Gln
TTG
[ENA]
¡û
>W09107519
ABJA01000001
Betaproteobacteria
Polynucleobacter necessarius STIR1 [ABJA]
165989
165913
-
Gln
TTG
[ENA]
¡û
>W141821514
JQNP01000001
Betaproteobacteria
Janthinobacterium sp. RA13 [JQNP]
4826572
4826648
+
Gln
TTG
[ENA]
¡û
>C141003805
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
1871542
1871618
+
Gln
TTG
[Ensembl]
¡û
>C141003905
CP004885
Betaproteobacteria
Candidatus Symbiobacter mobilis CR [CP004885]
1275114
1275037
-
Gln
TTG
[Ensembl]
¡û
>W1911199870
NRDQ01000059
Betaproteobacteria
Janthinobacterium sp. AD80 [NRDQ]
22925
23001
+
Gln
TTG
[ENA]
¡û
>W1911490731
OANS01000001
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
130634
130558
-
Gln
TTG
[ENA]
¡û
>W1810068178
PDZI01000008
Betaproteobacteria
Janthinobacterium sp. BJB303 [PDZI]
221940
221864
-
Gln
TTG
[ENA]
¡û
>W1810068283
PDZJ01000005
Betaproteobacteria
Janthinobacterium sp. BJB301 [PDZJ]
66188
66264
+
Gln
TTG
[ENA]
¡û
>W1810068368
PDZK01000007
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
88709
88633
-
Gln
TTG
[ENA]
¡û
>W1810068410
PDZL01000007
Betaproteobacteria
Janthinobacterium sp. BJB426 [PDZL]
66352
66428
+
Gln
TTG
[ENA]
¡û
>W1810068482
PDZM01000003
Betaproteobacteria
Janthinobacterium sp. BJB312 [PDZM]
404020
404096
+
Gln
TTG
[ENA]
¡û
>W1810068562
PDZN01000006
Betaproteobacteria
Janthinobacterium sp. BJB304 [PDZN]
152781
152705
-
Gln
TTG
[ENA]
¡û
>W1810068674
PDZO02000020
Betaproteobacteria
Janthinobacterium sp. BJB1 [PDZO]
32331
32255
-
Gln
TTG
[ENA]
¡û
>W1810069752
PEBS01000015
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
29986
29910
-
Gln
TTG
[ENA]
¡û
>W1810071318
PEEQ01000001
Betaproteobacteria
Janthinobacterium sp. 13 [PEEQ]
2585859
2585783
-
Gln
TTG
[ENA]
¡û
>W1810072815
PEFN01000001
Betaproteobacteria
Janthinobacterium sp. 35 [PEFN]
2131309
2131233
-
Gln
TTG
[ENA]
¡û
>W1810089389
PGES01000001
Betaproteobacteria
Janthinobacterium sp. 67 [PGES]
4642456
4642532
+
Gln
TTG
[ENA]
¡û
>W1810102007
PGTX01000003
Betaproteobacteria
Polynucleobacter brandtiae UB-Domo-W1 [PGTX]
254082
254158
+
Gln
TTG
[ENA]
¡û
>W1810121266
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
4250309
4250385
+
Gln
TTG
[ENA]
¡û
>W1810172810
PJMQ01000001
Betaproteobacteria
Janthinobacterium sp. 61 [PJMQ]
4882424
4882500
+
Gln
TTG
[ENA]
¡û
>W1810576760
QENT01000001
Betaproteobacteria
Janthinobacterium sp. 78 [QENT]
834573
834649
+
Gln
TTG
[ENA]
¡û
>W1810672015
QJTC01000003
Betaproteobacteria
Xylophilus ampelinus CECT 7646 [QJTC]
68861
68785
-
Gln
TTG
[ENA]
¡û
>W1810699133
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
216354
216430
+
Gln
TTG
[ENA]
¡û
>W1810699171
QMCH01000001
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
82296
82372
+
Gln
TTG
[ENA]
¡û
>C151025659
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
1879689
1879765
+
Gln
TTG
[Ensembl]
¡û
>C151100178
HG322949
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [HG322949]
5257211
5257135
-
Gln
TTG
[Ensembl]
¡û
>W1511355675
JRRH01000004
Betaproteobacteria
Janthinobacterium lividum MTR [JRRH]
65946
66022
+
Gln
TTG
[ENA]
¡û
>W1511588733
LBCO01000002
Betaproteobacteria
Janthinobacterium sp. KBS0711 [LBCO]
68872
68948
+
Gln
TTG
[ENA]
¡û
>C161092382
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
2087683
2087759
+
Gln
TTG
[Ensembl]
¡û
>WENV058274
AACY023323192
Marine microbial communities from Global Ocean Sampling (GOS)
1276
1354
+
Gln
TTG
[ENA]
>WENV058843
AACY023344181
Marine microbial communities from Global Ocean Sampling (GOS)
385
463
+
Gln
TTG
[ENA]
>WENV058871
AACY023345230
Marine microbial communities from Global Ocean Sampling (GOS)
1070
1148
+
Gln
TTG
[ENA]
>W121031797
AHHB01000016
Betaproteobacteria
Janthinobacterium lividum PAMC 25724 [AHHB]
52990
53066
+
Gln
TTG
[ENA]
¡û
>W1610070487
BCTH01000056
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
8124
8048
-
Gln
TTG
[ENA]
¡û
>W1610640147
LIZH01001293
Betaproteobacteria
Duganella sp. Ant L27C-9 [LIZH]
800
724
-
Gln
TTG
[ENA]
¡û
>W1610732857
LMKO01000022
Betaproteobacteria
Xylophilus sp. Leaf220 [LMKO]
140861
140937
+
Gln
TTG
[ENA]
¡û
>W1610751302
LNCE01000035
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
46155
46231
+
Gln
TTG
[ENA]
¡û
>W1610791978
LOJI01000001
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
133552
133628
+
Gln
TTG
[ENA]
¡û
>W1610792015
LOJJ01000001
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
36833
36909
+
Gln
TTG
[ENA]
¡û
>W1611052752
MAIK01000361
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
329
405
+
Gln
TTG
[ENA]
¡û
>W1611056267
MAQB01000056
Betaproteobacteria
Janthinobacterium lividum [MAQB]
123416
123340
-
Gln
TTG
[ENA]
¡û
>W1710067860
BCTH01000056
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
8124
8048
-
Gln
TTG
[ENA]
¡û
>W1710509380
FMXD01000009
Betaproteobacteria
Janthinobacterium sp. 551a [FMXD]
139724
139648
-
Gln
TTG
[ENA]
¡û
>W1710517048
FNDA01000003
Betaproteobacteria
Janthinobacterium sp. YR213 [FNDA]
233786
233710
-
Gln
TTG
[ENA]
¡û
>W1710522232
FNHA01000015
Betaproteobacteria
Janthinobacterium sp. OK676 [FNHA]
65971
66047
+
Gln
TTG
[ENA]
¡û
>W1710556781
FOKL01000011
Betaproteobacteria
Janthinobacterium sp. 344 [FOKL]
65442
65518
+
Gln
TTG
[ENA]
¡û
>W1710581741
FPKH01000013
Betaproteobacteria
Janthinobacterium lividum [FPKH]
66183
66259
+
Gln
TTG
[ENA]
¡û
>W1710596836
FTMV01000001
Betaproteobacteria
Janthinobacterium sp. TND4EL3 [FTMV]
566544
566620
+
Gln
TTG
[ENA]
¡û
>W1710720676
LFKP01000014
Betaproteobacteria
Janthinobacterium lividum [LFKP]
207929
207853
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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